Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06220 ATGGCCTTTATCTTTGTAGCTATGCAGAGCCAAATTGTGTGTAATGGTTGTAGGAGCATTCTGCTTTACCCAAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACAATCACCTCTGTTCCCCCACCTGGGATGGATATGTCGCAACTTTATTGTGGAGGCTGTAGGACATTACTAATGTACACACGTGGAGCTACAAGTGTCAGATGTTCCTGCTGTCACACTGTAAACCTTGCTCCAGCATCAAATCAAGTCGCCCATATCCCTTGTGGGAACTGCCGGACAACACTCATGTATCCATATGGAGCTCCCTCAGTCAAATGTGCTGTTTGTCACTATATCACTAATGTCAGTATGCCCAATGGAAGGCTTCCTATTCCTGTCCATAGACCTAATGGGACAACCAATCCTGGAACAGTACCTTCTACTTCAACATCAATGCCCCATTCTCAGAGCCAAACAGTGGTGGTAGAAAATCCAATGTCTGTTGATTCAAGTGGGAAATTGGTGAGCAATGTTGTTGTTGGTGTTACAACAGATAAGAAATAG 552 0.4457 MAFIFVAMQSQIVCNGCRSILLYPRGATNVCCALCNTITSVPPPGMDMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAPASNQVAHIPCGNCRTTLMYPYGAPSVKCAVCHYITNVSMPNGRLPIPVHRPNGTTNPGTVPSTSTSMPHSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06220 183 Pfam LSD1 zinc finger 14 38 IPR005735 -
Seca11g06220 183 Pfam LSD1 zinc finger 91 115 IPR005735 -
Seca11g06220 183 Pfam LSD1 zinc finger 53 77 IPR005735 -
Seca11g06220 183 PANTHER PROTEIN LSD1 9 182 IPR040319 -
Seca11g06220 183 NCBIfam zinc finger domain, LSD1 subclass 11 41 IPR005735 -
Seca11g06220 183 NCBIfam zinc finger domain, LSD1 subclass 88 117 IPR005735 -
Seca11g06220 183 NCBIfam zinc finger domain, LSD1 subclass 50 79 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06220 Seca-Chr11 162561022 162565671 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Seca11g06220 zf-LSD1 1.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06220 - - gmx:100776394 345.125