Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06185 ATGTGCCCAGTGTCCTTCAATTATGTGTTAACTGTCCCTTGGAACTCCTCTACTTGCCTTAACTTCCAACCTTTTCCATCTCAAAACCAAACACATACAAGTCTTTGTTGCCAAACTCTGTTATCCCTCTTTGGCATTGCCCTTGCACAAAACCTAAAAAAAAACTCTCTTTTCCATCTCCCTAACCTCCCTACCTCTATCTCATGCCTTCAAAATTTCCAAACCAAGCTCAATTCCCTCTCACTTCCTAATAACCTTTTGTCCTCTTGCTTTGACCCTCTTCAATTTGTGATCACTCCCAACATTTGTGCTCATATTCAGTCCAAGCAAGATTGGCTCAAAAGGGTTGGTCCTGCCCCACTGCTCAACACTGCATGTAAACCAGACCTCAGTGTTCTTGCCAATTGTGGTGCATGTACAGATGAGGGGCTCAAGGTTCTGCAGATTCTCACTGCCATTGATGGTAACACTTCACATTCCAAAGATTGCTTTTACTTCACAATACTTTATATTGTTGGAGTTGTGAATGAGTTTGGCCCTGAAAGCAAAGGTGCTATGTCTTGCATCCTTGAATTGCCTGTTAATTCTGAGGTAAAGGGCCATCATAATCATCATCATCATCATGCTCTTGTTATAGGGATAGTTGGAGCTTCAGTTGCATTTCTAGTTATTTTTTGGTATAAGAGAAAAAATAGTGGAAATTTGCTAGTCAATGCTGATCCACAGGAAGAAAGGTCTATCCTAAGATTGAGACCAAACACAGGGTCAATTTGGTTCAAGTTTGAGGATCTTGAAAAGGCCACAAACAAATTCTCACCACAGAATTTAATTGGTAGAGGTGGATTTGGGTCTGTTTTCAAGGGGATTCTACATGATGGCACAATGGTTGCTGTTAAAAGGATTGAAGAATCTGATTTTCAAGGAGATGCTGAGTTTTATAATGAAGTGGAGATTATTAGCAACTTGAAGCACCGCAATTTAGTGCCACTAAGAGGGTACATTGTTCATGATTATATGCTGAATGGTAGCCTTGAAGATCATCTCTTTCCAATCATGGACAATGAAAATGAAAAGAAATCATTGACTTGGCCTCAAAGAAAAAGCATAATCTTGGATGTGGCAAATGGGTCTCAGCTAAATACTAGAGTAGCTGGAACTCATGGATATCTAGCCCCAGAATATGCACTTTATGGCCAACTTAGTGAGAAGAGTGATGTGTATAGCTTTGGTGTGGTTGTTTTGGAGATAATGTGTGGAAGAAAAGCTCTTGAGTTGTCTTCTTCAGGAACACCAACTTTCTTGACCACAGATTGGGTCTGGTCATTGATGAAATCAGGAAACTTAGAAGAAGCTTTGGATGCTTCTATCTTAAGATTTTTGCTAGTTGGAATTCTGTCTTCTCATGTAATGGTTGGTTCAAGGCCAACAATTTTGGATGCTTTGAAAATGTTAGAAGGGGATATTGAGGTTCCACCAATTCCAGATAGGCCAATGACTCTTGGGCATTATATGTTTTCCAGTGAAGGACAGGAAACAAGAACAACCACTTGTTGCAAAACTTTGTTGAATCTCTTTGGTATAGCACTTGCAGATAACCTCAAGAAAAACTCTCTTTTCCATCTCCCTAACATCTCTACCTCTATCTCATGCCTTGAGGACTATCAATCAAAGCTCACTTCTCTCTTACTTCCCAATAACCTTGTTTCCTCTTGCTTTGATCCACTTCAATTTGTTATTAGCCCCAATATTTGTGCTAATATTCAAACTAAGCAAGATTGGATCAATAGGGTTGGTCCCTCAAATACAGCACTTGGGTACAATGTTCAGCAGATGGTGGCACGAATTGATGGTAATGATTCACATTCACAAGATTGTTTTTACTTCACAATACTTTATATTGCTGGAATTGTGAACAAGTTTGGCCCTGAAAGCAAAGGATTGTTATTTTGGTACAAAAGGTGGGTGAAGAGAAAAAGTATTGAAAAATTGTTAGCCTCTTTTGAATCACAAGAGGAAACAAGGTCTAGTCAGAGATTGAGACCAAATGCAGGGCTAATTTGGTTCAAGTTTGAGGACCTTGTGAAGGCTACCAACAATTTTTCACCTCAGAACTTTATTGGCAGAGGTGGGTCTGGGTCAGTTTACAAGGGGATTTTACCTGATGGCAAAATGGTTGCTGTTAAAAGGATTGAAGAATCAGATTATCAAGGAGATGCTGAGTTCTATAGAGAAGTGGGGATTGCTTTTGATGTTTCTGTCTTAACAGATGAAAGTTCTACTAGAAACATAATGGAGAGATTTTTACTGGTTGGAATTCTGTCTTCTCATGTAATTGCTGCTTCAAGGCCAACAATTTTGGATGTTTTGAGGATGTTAGAAGGGGATATTGAGGTTCCACCAATTCCAGATAGGCCAATGTCTCTTGGCCATTACATGTTTCCTAGTGATGATAGTTTTGGGATGAACACAGAATTTGGGTTTGAAGGCTTATCTCGGTTTGAGAATCCATCCTTGAAAAATTGGACTAGAACAAATTGA 2538 0.3936 MCPVSFNYVLTVPWNSSTCLNFQPFPSQNQTHTSLCCQTLLSLFGIALAQNLKKNSLFHLPNLPTSISCLQNFQTKLNSLSLPNNLLSSCFDPLQFVITPNICAHIQSKQDWLKRVGPAPLLNTACKPDLSVLANCGACTDEGLKVLQILTAIDGNTSHSKDCFYFTILYIVGVVNEFGPESKGAMSCILELPVNSEVKGHHNHHHHHALVIGIVGASVAFLVIFWYKRKNSGNLLVNADPQEERSILRLRPNTGSIWFKFEDLEKATNKFSPQNLIGRGGFGSVFKGILHDGTMVAVKRIEESDFQGDAEFYNEVEIISNLKHRNLVPLRGYIVHDYMLNGSLEDHLFPIMDNENEKKSLTWPQRKSIILDVANGSQLNTRVAGTHGYLAPEYALYGQLSEKSDVYSFGVVVLEIMCGRKALELSSSGTPTFLTTDWVWSLMKSGNLEEALDASILRFLLVGILSSHVMVGSRPTILDALKMLEGDIEVPPIPDRPMTLGHYMFSSEGQETRTTTCCKTLLNLFGIALADNLKKNSLFHLPNISTSISCLEDYQSKLTSLLLPNNLVSSCFDPLQFVISPNICANIQTKQDWINRVGPSNTALGYNVQQMVARIDGNDSHSQDCFYFTILYIAGIVNKFGPESKGLLFWYKRWVKRKSIEKLLASFESQEETRSSQRLRPNAGLIWFKFEDLVKATNNFSPQNFIGRGGSGSVYKGILPDGKMVAVKRIEESDYQGDAEFYREVGIAFDVSVLTDESSTRNIMERFLLVGILSSHVIAASRPTILDVLRMLEGDIEVPPIPDRPMSLGHYMFPSDDSFGMNTEFGFEGLSRFENPSLKNWTRTN. 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06185 845 ProSitePatterns Protein kinases ATP-binding region signature. 706 728 IPR017441 GO:0005524
Seca11g06185 845 SUPERFAMILY Protein kinase-like (PK-like) 678 747 IPR011009 -
Seca11g06185 845 Pfam Protein tyrosine and serine/threonine kinase 388 421 IPR001245 GO:0004672|GO:0006468
Seca11g06185 845 Pfam Protein tyrosine and serine/threonine kinase 275 377 IPR001245 GO:0004672|GO:0006468
Seca11g06185 845 SUPERFAMILY Protein kinase-like (PK-like) 255 499 IPR011009 -
Seca11g06185 845 ProSitePatterns Protein kinases ATP-binding region signature. 277 299 IPR017441 GO:0005524
Seca11g06185 845 Gene3D Transferase(Phosphotransferase) domain 1 375 499 - -
Seca11g06185 845 ProSiteProfiles Protein kinase domain profile. 271 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06185 845 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 647 747 - -
Seca11g06185 845 Pfam SPARK 509 602 IPR043891 -
Seca11g06185 845 Pfam SPARK 2 164 IPR043891 -
Seca11g06185 845 Gene3D Phosphorylase Kinase; domain 1 661 753 - -
Seca11g06185 845 Gene3D Phosphorylase Kinase; domain 1 237 340 - -
Seca11g06185 845 FunFam Receptor-like serine/threonine-protein kinase At4g25390 237 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06185 Seca-Chr11 162309314 162320072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06185 748 816 Receptor kinase-like Gene Family AT1G11050 58.904 8.34e-18 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Seca11g06185 SPARK 2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06185 - - gmx:100788367 675.241