Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06183 ATGGAGAGGTACGAGCTAGTGAAGCAGGTAGGACATGGGGATCACACGGTGGTAAAGGTCATGCGCCATAAACAGACCAAAGAACTTGTTGCCGTCAAATACATCCCACGGGGCAATAAGATTGATGAGAGGCTGAAAAGGGAAATCATAAACCATAGATCTCTTCACCATCCGAATATTATTGCCTTCAAGGAGTTGGTTTTGACTCCAACACACATTGCAATAGTAATGGAGTATGCATCTGGTGGAGATCTGTATGACCATCTTTACAATGTATGCTTATGTGAAAATGAGGTTCGGTATTTCTTTCAGCAGTTAATTTCAGGAGTTAGTTATTGTCATGACATGGAAATATGTCATCGAGATTTGAAGTTGGAGAACACATTATTGGAAGGCAAATGTCTTAAAATTTGTGATTTCGGCTACTCTAAGTCATATCTAATTCACTCAAGGGCTAATTCAATGATTGGAACTCCAGCCTATATTGCACCAGAGGTTTTTTCTGGCAAAGAATATGATGGAAAGTTGGCAGATATATGGTCCTGTGGGGTGATACTTTATGTGATGCTGGTGGGATCATTCCCATTTGAGGACCCAGAGGATCACTGCAATTTAAGAAAAACAATAAAAACGTCGCCTGTTCCCGCTGCTACATGTTGTTCTTCTTCTTCCTCGTCGTCGCCAGCATCTTCCGATAAGTCTAAGACGGAGAAGAAGAAACTCGTGGATCGCCTTTCGGCCGTCATTGACGCTGTCAACGATCGCAAATTACCTCCTGAGCTACGCGGCCAGCGCAACAATGTCAGCTATTGCTCGTGGTTATCCTCTGAATTTGGGAAACTCGGTTGCGGTGATGGTAACCCAACCTTTGTGATTGGAGACCCCATGAAGAAGGTTCATATGGGTAAAAACAAGTCATCTGTTAGTCTTGCTAGCACTATTTACTTGTCCCTTCCTATGGTGTATGAGCGAATTATGGATGTTCAATACAAGATCCCAGACGATGTTTACATGTCTCAAGGCTGTAGAAATCTGATATCTCGCATTTTTGTGGCAGATCCAGAAAAGAGAATTACCATGAAGGAAATTAAGTCCCATCCATGGTTTTTAAATAACTTGCCTAAGGAATTGACAGAAGAGGCTCAGACTCTTCAGTACAGATCAAAAGAAAACTCAAGCTCTGCTCAAAGTATAGAAGACATCATGAAAATTATTTACCAGGCCAAAACTCTACCAGCACCTGCTTCCAGTGTTAACCAGGCCAAAACTATGCCTTCAACTTCAGTGGAGAAGGTCAGAAAGGAGGTTGAGGCTCTTCACCCTGATGATGAACACATTGTGGTTCACAATCATGGAGTTTGGCGAATCAAGGGCATTATTCAGTCTGTGGAAATAGAACATCAAGAAGTTCAAGCCTACTTGGAGAAGTCCTTTAGCTCAAAACTTCAATCATGGCCCACCTCAGAGGCCAAGGTAAGCCTTCTCATGAATCAATATGATTTGAGCCCATACATGTGCATATCCAAAGCTTCATGGGCAGAGCTTTGGTTTTGCCAATTCAATTCTTTGACACAGAGAACTACAGAGTTGGGTAATTTCATTCACTACATGGCTACATTTGTTTCTGGTTTTGCTGTGGGTTTCACTGCTGTTTGGAAATTAGCACTGATTACCCTCGCTGTAGTCCCTATGATAGCAGTAATCGGAGCCATTCACACCACCACATTGGCCAAGCTATCTAGTAAAATCCAAGAAGCTCTTTCTCAGGCTGGCAACATTGCAGAACAAAAGATTGGCTATAGGAGTGGTTTTACAAAGGGAATGGGATTGGGTGCCACTTACTTTGTTGTTTTCTGCTGTTATGCTCTTTTGCTATGGTATGGAGGCTATCTAGTTAGGCACCACTACACCAGTGGAGGACTTGCCATTGCCACCATGTTTTCTGTTATGATGGGTGGATTGGCTTTAGGCCAGTCTGCACCTATCATGACTGCGTTTACAAAGGCCAGAGTTGCAGCTGCAAAAATCTTCCGTGTGATTGATCACAAGCCGAGTATAGACAAAGAGAGTGAATCAGGTGTGGAGTTAGACACTGTTACAGGATTAGTGGAGCTGAAAAATGTGGACTTTTCATACCCATCAAGGCCAGAGGTTCGGATCCTTAACAATTTCAACTTGAATGTGCCTGCTGGAAAGACCATAGCTTTGGTGGGTAGCAGTGGCTCTGGCAAGAGCACAGTTGTCTCTCTTATTGAGAGATTCTATGATCCTTCTTCAGGACAAGTTTTGCTTGATGGGCATGATGTTAAGACATTGAAGCTTAGGTGGTTGAGACTTGAGACAGCAAATAGGACTAGTGAGCCAAGAGCCTGCTTGTTGGTTTTGACTCCAACACACATTGCAATAGTCATGGAGTATGCATCGGGTGGAGATCTGTATGACCATCTTTGTAATGTATGCTTATGTGAAAATGAGGTTCGGTATTTCTTTCAGCAGTTAATTTCAGGAGTTAGTTATTGTCATGACATGTTGGCAGATATATGGTCCTGTGGTGTGATACTTTATGTGATGCTGCGAATTATGGATGTTCAATACAAGATCCCAGACGATGTTTACATATCTGAAGGCTGTAGAAATCTGATATCTCGCATTTTTGTGGCAGATCCAGAAAAGAGAATTACCATGAAGGAAATTAAGTCCCACCCATGGTTTTTAAATAACTTGCCTAAGGAATTGACAGAAGAGGCTCAAACTCTTCAGTACAGATCAAAAGAAAACTCAAGCTCTTCTCAAAGTATAGAAGACATCATGAAAATTATTTACCAGGCCAAAACTCTACCTGCACCTGCTTCCAGTGTTAACCAGGCCAAAACTATGCCTTCAACTTCATGTCCAATTCTATTAGAGGATTTTAGCCTGAAGTGTAGAATAAGTAACTAG 2940 0.4211 MERYELVKQVGHGDHTVVKVMRHKQTKELVAVKYIPRGNKIDERLKREIINHRSLHHPNIIAFKELVLTPTHIAIVMEYASGGDLYDHLYNVCLCENEVRYFFQQLISGVSYCHDMEICHRDLKLENTLLEGKCLKICDFGYSKSYLIHSRANSMIGTPAYIAPEVFSGKEYDGKLADIWSCGVILYVMLVGSFPFEDPEDHCNLRKTIKTSPVPAATCCSSSSSSSPASSDKSKTEKKKLVDRLSAVIDAVNDRKLPPELRGQRNNVSYCSWLSSEFGKLGCGDGNPTFVIGDPMKKVHMGKNKSSVSLASTIYLSLPMVYERIMDVQYKIPDDVYMSQGCRNLISRIFVADPEKRITMKEIKSHPWFLNNLPKELTEEAQTLQYRSKENSSSAQSIEDIMKIIYQAKTLPAPASSVNQAKTMPSTSVEKVRKEVEALHPDDEHIVVHNHGVWRIKGIIQSVEIEHQEVQAYLEKSFSSKLQSWPTSEAKVSLLMNQYDLSPYMCISKASWAELWFCQFNSLTQRTTELGNFIHYMATFVSGFAVGFTAVWKLALITLAVVPMIAVIGAIHTTTLAKLSSKIQEALSQAGNIAEQKIGYRSGFTKGMGLGATYFVVFCCYALLLWYGGYLVRHHYTSGGLAIATMFSVMMGGLALGQSAPIMTAFTKARVAAAKIFRVIDHKPSIDKESESGVELDTVTGLVELKNVDFSYPSRPEVRILNNFNLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPSSGQVLLDGHDVKTLKLRWLRLETANRTSEPRACLLVLTPTHIAIVMEYASGGDLYDHLCNVCLCENEVRYFFQQLISGVSYCHDMLADIWSCGVILYVMLRIMDVQYKIPDDVYISEGCRNLISRIFVADPEKRITMKEIKSHPWFLNNLPKELTEEAQTLQYRSKENSSSSQSIEDIMKIIYQAKTLPAPASSVNQAKTMPSTSCPILLEDFSLKCRISN. 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06183 979 ProSiteProfiles Protein kinase domain profile. 648 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06183 979 Gene3D Transferase(Phosphotransferase) domain 1 790 843 - -
Seca11g06183 979 Gene3D Transferase(Phosphotransferase) domain 1 844 962 - -
Seca11g06183 979 Gene3D Transferase(Phosphotransferase) domain 1 312 445 - -
Seca11g06183 979 ProSiteProfiles Protein kinase domain profile. 4 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06183 979 SUPERFAMILY Protein kinase-like (PK-like) 1 425 IPR011009 -
Seca11g06183 979 Pfam ABC transporter 721 781 IPR003439 GO:0005524
Seca11g06183 979 FunFam Maternal embryonic leucine zipper kinase 1 227 - -
Seca11g06183 979 Gene3D - 693 780 IPR027417 -
Seca11g06183 979 SMART serkin_6 4 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06183 979 SMART serkin_6 731 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06183 979 Pfam Protein kinase domain 4 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06183 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 118 130 IPR008271 GO:0004672|GO:0006468
Seca11g06183 979 Gene3D Transferase(Phosphotransferase) domain 1 81 265 - -
Seca11g06183 979 PANTHER SERINE/THREONINE KINASE 845 931 - -
Seca11g06183 979 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 703 932 IPR003439 GO:0005524
Seca11g06183 979 MobiDBLite consensus disorder prediction 214 238 - -
Seca11g06183 979 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 527 668 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca11g06183 979 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 694 778 IPR027417 -
Seca11g06183 979 Gene3D ABC transporter type 1, transmembrane domain 599 692 IPR036640 GO:0005524|GO:0016020
Seca11g06183 979 Gene3D ABC transporter type 1, transmembrane domain 530 598 IPR036640 GO:0005524|GO:0016020
Seca11g06183 979 Pfam ABC transporter transmembrane region 530 598 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca11g06183 979 SUPERFAMILY ABC transporter transmembrane region 529 687 IPR036640 GO:0005524|GO:0016020
Seca11g06183 979 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Seca11g06183 979 MobiDBLite consensus disorder prediction 214 231 - -
Seca11g06183 979 CDD ABC_6TM_Pgp_ABCB1_D1_like 530 676 - -
Seca11g06183 979 SUPERFAMILY Protein kinase-like (PK-like) 795 954 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06183 Seca-Chr11 162276128 162295312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06183 603 796 Calmodulin-binding Proteins AT2G36910 38.462 4.60e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Seca11g06183 Pkinase 4.7e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06183 K05658 - gmx:100814667 430.639