Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06180 ATGGATGGTGACATTCCCCAAAAGTCTCCAAATAGGGATCAAGATTGCCAAAAGGAACCAATTTTCTTACATGGCGACTTGGATCTGTTGATAATAGAAGCTAAGTCTCTTCCAAATTTAGATTTATCTAGTGAAGCAGTTAGAAAATGTATGACTATGGGTAACATGTGCACACCTCCCTTTGTAAAAGGACTTAAAACACATTCTGGAAAAGATAAGATTATAACTAGTGATCCTTATGTCTCTGTCTGTCTAGCTGGGGCTACCATAGCTCAAACTAGAGTTATTCCTAATTGTGAGAACCCTTTGTGGGATGAGCATTTTGTTGTTCCTGTTGCTCACCCTGTTCAAAAAGTGGAGTTTCTTGTTAAGGATAATGATATTCTTGGGGCTGAACTCATTGGAGTAGTGGAGATACCTGTTCAAAAGATACTGCCAGGAAACATTATAAATGATTGGTTTCCCATCATTGGTCAGTATGGAAACTGCTTAAAACCTTATCCTGAGTTGCATATTTCTATTCAGTATAGGGCAATTGGAGCAAATTCTGGAAGTATAAGTGATGGAGATGGGACAACTTGTTTAGGGGTTCCTAAAACATATTTCCCTCTAAGGAAAGGAGGGAGTGTGACTTTATATCAAGATGCACATGTACCAGATGGCATGCTACCTGAAATTCCACTTGAGGGTGGAAAACTATTTCAGCACAATAAATGTTGGGAGGATATATGCCATGCAATTTTGGAAGCTCACCACCTAATATATATTATAGGATGGTCAGTTTTCCACCCAATAAGGCTTGTCAGAGAACCAACAAAACCATTGCCTTCTGGGGGAGAGCTTTCACTTGGAGAGCTGTTGAAATACAAGTCACAAGAAGGGCTCCGAGTGGTTATGTTGATTTGGGATGACAAAACTTCACATGACAAGTTTCTTTTGAAAACAGATGGTGTCATGCAGACTCATGATGAAGAAACTAAAAAGTTTTTTAAACATTCCACAGTTCATTGTGTGCTATCTCCACGTTATGCAAGCAATAAACTCAGTATTTTCAAGCAACAGGTTGTGGGGACCCTCTTTACACATCACCAGAAATGTGTGCTTGTAGACACTCAAGCTTCTGGGAATAATCGGAAAATAACAGCTTTTATTGGTGGTCTTGATCTATGTGATGGAAGATATGATACACCTGAGCATCGACTCTTTAGTGATCTAGAGTCAGTTTTTCACAAAGATTTTCATAATCCTACGTTTCAAATACAGTTAAATTCGCTTGGACCAAGGCAACCATGGCATGACTTACATTGCAAAGTTGAAGGTCCAGCTGCATATGATATATTGACCAATTTTGAACAGAGATGGAGGAAGGCCAAAAAATGGCGCGACTTCAGGCTCAAAAAGGTGACAAATTGGCATGATGATCCATTGCTAAAGCTAGACCGTATTTCATGGATTGTCAATCCATCTTCTGGTCCCAATGGTGATAATGTTGTCCATGTAACCGATGAAAATGATCCTGAGACTTGGCATGTGCAGGTATTTCGGTCCATAGATTCAGGATCTGTGAAGGGATTTCCAAAGGATATTGACAGAGCTAAGGCTCAGAATCTTTTATGTGGAAAAAATTTGAAAGTGGACCAAAGCATCCATACTGCTTATGTAAAAGCAATAAGATCAGCTAAGCACTTCATATATATTGAGAATCAGTATTTCCTGGGTTCCTCATATCATTGGCCTTCATATAAAAATGCAGGTGCAAATCACTTGATTCCCATGGAGTTGGCTTTAAAAATTGCTAGCAAGATCAACGCAAATGAACGTTTTCGTGTATATATAGTTATACCAATGTGGCCAGAGGGGGTTCCAACTAGTGCATCTGTTCAAGAAATCTTGTTCTGGCAGGGACAGACAATGTCTATGATGTTCAAGATTGTTGCAGATGCCCTTAAAAAAGCTGGTCTCTCTGATCGGTATCATCCACAAGATTATCTCAATTTTTACTGCCTTGGAAAGAGAGAACCTCAATCCCCAGAATATCAATCAGCACAAAATCAATCATCTGAAAATCGTGGCTTGGCATCAGCCAAGAAATTCAGACGTTTTATGATTTATGTTCATGCCAAAGGAATGATAGTTGATGATGAATACGTAATCATTGGATCAGCAAATATTAACCAGAGATCATTGGATGGTTCAAGGGATACAGAAATAGCTATGGGTGCTTATCAACCAAAATATACATGGACAGAAAAGAAATCTCATCCACTTGGCCAGGTGTATGGATACCGGATGTCACTGTGGGCTGAGCACCTTGGTAGTATTGATGGTGCTTTTACTGAACCTCACACCCTGGAATGTGTTAGACATGTCAACAAGATTGCCAGACAAAACTGGGAAACATTTGTGGCTGAGGAATGGAATCAGATGAGGGGACACTTGTTGCAGTATCCAGTTTATGTCAGTAGGGATGGAAAAGTCAGTGCACTGAATGGTTGTGAGTGCTTTCCTGATGTTGGAGGCAAAATTCTTGGATCACCCAATTCACTTCCGGATGCACTAACTACTTGA 2568 0.398 MDGDIPQKSPNRDQDCQKEPIFLHGDLDLLIIEAKSLPNLDLSSEAVRKCMTMGNMCTPPFVKGLKTHSGKDKIITSDPYVSVCLAGATIAQTRVIPNCENPLWDEHFVVPVAHPVQKVEFLVKDNDILGAELIGVVEIPVQKILPGNIINDWFPIIGQYGNCLKPYPELHISIQYRAIGANSGSISDGDGTTCLGVPKTYFPLRKGGSVTLYQDAHVPDGMLPEIPLEGGKLFQHNKCWEDICHAILEAHHLIYIIGWSVFHPIRLVREPTKPLPSGGELSLGELLKYKSQEGLRVVMLIWDDKTSHDKFLLKTDGVMQTHDEETKKFFKHSTVHCVLSPRYASNKLSIFKQQVVGTLFTHHQKCVLVDTQASGNNRKITAFIGGLDLCDGRYDTPEHRLFSDLESVFHKDFHNPTFQIQLNSLGPRQPWHDLHCKVEGPAAYDILTNFEQRWRKAKKWRDFRLKKVTNWHDDPLLKLDRISWIVNPSSGPNGDNVVHVTDENDPETWHVQVFRSIDSGSVKGFPKDIDRAKAQNLLCGKNLKVDQSIHTAYVKAIRSAKHFIYIENQYFLGSSYHWPSYKNAGANHLIPMELALKIASKINANERFRVYIVIPMWPEGVPTSASVQEILFWQGQTMSMMFKIVADALKKAGLSDRYHPQDYLNFYCLGKREPQSPEYQSAQNQSSENRGLASAKKFRRFMIYVHAKGMIVDDEYVIIGSANINQRSLDGSRDTEIAMGAYQPKYTWTEKKSHPLGQVYGYRMSLWAEHLGSIDGAFTEPHTLECVRHVNKIARQNWETFVAEEWNQMRGHLLQYPVYVSRDGKVSALNGCECFPDVGGKILGSPNSLPDALTT. 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06180 855 CDD C2_plant_PLD 20 177 - -
Seca11g06180 855 Gene3D Endonuclease Chain A 230 477 - -
Seca11g06180 855 SUPERFAMILY Phospholipase D/nuclease 547 771 - -
Seca11g06180 855 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 358 393 IPR001736 GO:0003824
Seca11g06180 855 Pfam C2 domain 25 156 IPR000008 -
Seca11g06180 855 ProSiteProfiles C2 domain profile. 2 154 IPR000008 -
Seca11g06180 855 Pfam Phospholipase D C terminal 777 845 IPR024632 -
Seca11g06180 855 Gene3D Endonuclease Chain A 516 752 - -
Seca11g06180 855 SMART pld_4 701 728 IPR001736 GO:0003824
Seca11g06180 855 SMART pld_4 358 393 IPR001736 GO:0003824
Seca11g06180 855 Gene3D C2 domain 21 177 IPR035892 -
Seca11g06180 855 PANTHER PHOSPHOLIPASE D 21 844 IPR015679 -
Seca11g06180 855 FunFam Phospholipase D delta 230 474 - -
Seca11g06180 855 PIRSF PLD_plant 12 855 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Seca11g06180 855 SMART C2_3c 26 153 IPR000008 -
Seca11g06180 855 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 23 177 IPR035892 -
Seca11g06180 855 Pfam PLD-like domain 554 737 IPR025202 -
Seca11g06180 855 SUPERFAMILY Phospholipase D/nuclease 198 463 - -
Seca11g06180 855 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 701 728 IPR001736 GO:0003824
Seca11g06180 855 Pfam Phospholipase D Active site motif 359 393 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06180 Seca-Chr11 162255143 162262541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06180 21 854 Phospholipase D Gene Family (Wang group) AT2G42010 54.809 0.0 932
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06180 K01115 - gmx:100779740 1538.86