Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06179 ATGGCTTCAAGAAAGGTCGATAACCCTCACTCTGGCGACGGTGCTAGTCCCGGGAAAATCTTCATCGGAGGGTTAGCCAAAGATACCACCTTAGACACTTTTGTGAAGTACTTCGAGAAGTATGGAGAGATAACGGACTCCGTTATCATGAAGGACCGACACACGGGTCGACCCAGGGGATTCGGGTTCATCACTTACGCGGACCCTTCCGTCGTTGACGAAGTCATTCAGGAGAACCACATCATTAGCGGCAAGCAGGTACCGTCTTTAGGTGTTTTAATTTGCTCTTACCAGGTTGAGATCAAGAGGACTATTCCGAAGGGTTCATCACAAGCCAATGATTTCAAAACAAAGAAAATTTTTGTCGGTGGTATTCCAACAGCTGTAACTGAAGATGAGCTCAAGAACTTCTTCTCTAAGTATGGGAAGGTCGTGGAACATGAGATAATACGTGACCACACCACGAAACGATCCCGGGGATTTGGGTTTATAGTTTTTGACAATGAAAAGGTTGTTGATAATATTTTGGCTGATGGGAACATGATTGATATGGCTGGTACACAGGTTGAGATCAAGAAAGCTGAACCAAAGAAATCCTCAAACTCAACATCTCTTCCTCCATTTGCTAGTGACTCTAGGGCACGTTCTTACGGTGATGGTTTTGGTGGATTTGGCGATTCTTATGGAGGTTTTGCTAGTGGTGGTTATGGCCCTGCATCTTATAGGTCACTCGGAGGTTTTGGGGGTAGGCTTGGTGATTATGGTGGATATGGAGGTGATGACTTCAATGGTAGTTTTGGGGGTTATGGTGGTGCTGGTGGCTATGCAGGCTTTCGAGGAGAATCGTCTTTTGGCTACTCTAGTCGCTATGGATCCTACATGGGGGGTCTTGGTGGTGGGTTAGGAGCATATGGACGAGGTGGTGGAGGCTATGGAAGCTATGGTGGTCCAAGCACTGGTGAGGGTTATGAAGGCCCTGGTGCTGCTGGTTATGGTGGGGCAGGAGGAGGGCTGTATGCTAGTAGGGGAAGTTATGGTGGAAATAGTCGTTACCACCCTTATGCAAGATAG 1071 0.4734 MASRKVDNPHSGDGASPGKIFIGGLAKDTTLDTFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDEVIQENHIISGKQVPSLGVLICSYQVEIKRTIPKGSSQANDFKTKKIFVGGIPTAVTEDELKNFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDNEKVVDNILADGNMIDMAGTQVEIKKAEPKKSSNSTSLPPFASDSRARSYGDGFGGFGDSYGGFASGGYGPASYRSLGGFGGRLGDYGGYGGDDFNGSFGGYGGAGGYAGFRGESSFGYSSRYGSYMGGLGGGLGAYGRGGGGYGSYGGPSTGEGYEGPGAAGYGGAGGGLYASRGSYGGNSRYHPYAR. 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06179 356 Gene3D - 18 107 IPR012677 -
Seca11g06179 356 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 196 IPR000504 GO:0003723
Seca11g06179 356 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 106 IPR000504 GO:0003723
Seca11g06179 356 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 10 356 - -
Seca11g06179 356 Gene3D - 108 230 IPR012677 -
Seca11g06179 356 FunFam Heterogeneous nuclear ribonucleoprotein 1 109 236 - -
Seca11g06179 356 SUPERFAMILY RNA-binding domain, RBD 12 85 IPR035979 GO:0003676
Seca11g06179 356 SUPERFAMILY RNA-binding domain, RBD 106 224 IPR035979 GO:0003676
Seca11g06179 356 SMART rrm1_1 19 91 IPR000504 GO:0003723
Seca11g06179 356 SMART rrm1_1 119 192 IPR000504 GO:0003723
Seca11g06179 356 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 79 IPR000504 GO:0003723
Seca11g06179 356 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 180 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06179 Seca-Chr11 162243754 162247181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06179 4 205 Eukaryotic Initiation Factors Gene Family AT1G71770 26.667 5.64e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06179 K12741 - gmx:100801373 389.808