Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06178 ATGGGTAAGGGCCCCTTCTCCTTTCGCCGCTCCGCCTCCCGCCGCCGCCACAAGAAGGCCGCGGTTCCACCACAGTCGCCGCCGATTGCGCCCGAAATTGCAGGTTCTCCGGCGGAGAACGCCGACAACCGGTTGATCACCGGTGGCGCGGTGATGAAGGCGAAGAAGAAAACCGGCGGAGCCAGGTTGTGGATGCGGTTTGACCGTTCAGGCCGGTCAGAGCTCGTGGAGTGGGAGAAAAACACGATCATCCGTCACGCATCGATTCCCGCTAGGGACTTGAGAATTTTGGGCCCTGTCTTCTCCCATTCCTCCAATATCCTCGCAAGAGAGAAAGCAATGGTGGTTAATTTGGAGTTTATAAAGGCTATAGTGACAGCTGAAGAAGTGTTATTGCTTGATCCTCTTCGGCAGGAGGTTCTTCCATTTGTTGAACAACTCAGGCAACAACTTCCACATAAGAATCAACAACCACCTAAACAACTACTTGGTGGTGGACCTGGGGATGAACAAGAAAGTGAAATGCAGGTTTCTTCTGCTGCTGCTGGTAGACAATGGTTACCTGTGCCAGAGGCTGTTGAAGGTTTGCAGTCTGAGCTTCCATTTGAGTTTCAAGTTCTGGAGATTGCTCTGGAGGTTGTTTGTACTTATCTGGACTCGAATGTGGCAGACCTTGAGAGAGGTGCTTATCCTGTGTTAGATGAATTGGCTAGGAATGTTAGCACCAAGAATCTTGAACATGTACGAAGTTTGAAGAGCAATCTTACACGTTTGCTCGCACGCGTGCAAAAGGTGCGAGATGAAATTGAGCATCTATTAGATGACAATGAAGACATGGCACAACTATATTTGACAAGGAAGTGGTTGCAAAATCAGCAATTTGAGGCTCATTTGGGTACCACAACCTCAAATAACCTGTCAAATACTACACATGTTGTTCGTCGACTTAGCTCTACCAGAAGTGGAAGTCTTGTGACTAGCAACTACAGCGATGATAATGATGTGGAGGACTTGGAGATGTTGCTTGAGGCATATTTTATGCAGTTGGATGGAACTCGTAACAAGATATTGTCTGTTAGGGAGTATATTGATGACACTGAAGACTATGTCAACATCCAACTTGATAACCACAGAAATGAACTTATTCAGCTGCAGTTGACACTGACTATTGCATCATTTGCTATTGCTGTTGAAACTTTGATAGCTAGTGCATTTGGTATGAACATTCCTTGTACATTATATAATACAGATGGAATATTTTGGACCGTTGTTTGGGTCATGTCTGCAGCTTGCGTGTTGCTCTTCCTGCTTGTTTTAGCGTATGCAAAATGGAAAAAGTTGCTGGGATCATAA 1353 0.4605 MGKGPFSFRRSASRRRHKKAAVPPQSPPIAPEIAGSPAENADNRLITGGAVMKAKKKTGGARLWMRFDRSGRSELVEWEKNTIIRHASIPARDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVLPFVEQLRQQLPHKNQQPPKQLLGGGPGDEQESEMQVSSAAAGRQWLPVPEAVEGLQSELPFEFQVLEIALEVVCTYLDSNVADLERGAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAQLYLTRKWLQNQQFEAHLGTTTSNNLSNTTHVVRRLSSTRSGSLVTSNYSDDNDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNHRNELIQLQLTLTIASFAIAVETLIASAFGMNIPCTLYNTDGIFWTVVWVMSAACVLLFLLVLAYAKWKKLLGS. 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06178 450 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 386 438 IPR045863 -
Seca11g06178 450 CDD Mrs2_Mfm1p-like 64 447 IPR039204 -
Seca11g06178 450 FunFam Magnesium transporter MRS2-1 52 135 - -
Seca11g06178 450 Pfam CorA-like Mg2+ transporter protein 331 441 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Seca11g06178 450 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 38 448 IPR039204 -
Seca11g06178 450 Gene3D Magnesium transport protein CorA, transmembrane region 388 446 - -
Seca11g06178 450 Coils Coil 248 282 - -
Seca11g06178 450 Gene3D Magnesium transport protein CorA, transmembrane region 137 381 - -
Seca11g06178 450 MobiDBLite consensus disorder prediction 1 39 - -
Seca11g06178 450 Gene3D - 50 135 - -
Seca11g06178 450 MobiDBLite consensus disorder prediction 154 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06178 Seca-Chr11 162231568 162235040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06178 1 450 MRS2 Gene Family AT3G58970 67.401 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06178 K16075 - gmx:100812561 697.967