Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06175 ATGGAGATTCACTACAGCCAAAGTTACTCCGAAAGGCGCCCCATTCTCAAGTCAAAGGCTCCCGCTGTTAAATGGGTTAAAGAATGGGTTCCCCAAGATCTCGTAACAACTGGGGGGAAGTGCATGCTCTTAAAATGGGTATCAGAGGATACCTTAAAGGCCTTGAAAGAAAGGGAAAAGGAGATATCAGTTCCTGAGCCAGAACCAGAGCCAACTACTGAAGTGCTTTTTCTTTGCAGCTATGATGGCTGTGGAAAGACATTCATAGATGCTGGTGCATTGAGGAAGCATTCTCACATCCATGGAGAGAGGCAATATGTTTGTCACTATGAAGGATGTGGAAAGAAATTTCTAGACAGCTCAAAGTTGAAAAGGCATTTTCTCATTCATACAGGAGAGAGGGATTTTGTGTGTCCTTATGAAGGTTGTGGTAAGGCCTTCTCCCTGGATTTCAATTTAAGGTCTCACATGAAAACACATTCACAAGAGAACTATCATATCTGCCCATACCCAGATTGCGGAAAGAGATTTGCCCACGAATACAAGCTGAAGAATCACGTTGCATCTCATCATGAAAAGAATGCATCAGTTGAGGTGATCAAGTACACTCCACCTTCAGAGAAGCAAACAAAAACTACTAAACCTTCTGGAGGGGCATATGGTTCTGCATCATCTGATCGCCCCTATGCATGTCCTTATGAAGGATGTGAAAAAGCTTACATCCATGAATACAAGCTTAGACTCCATTTGAAGAGGGAGCATCCAGGGCAAATGTCTGATGAAAATGCTTATGCATGTCCTTATGAAGGATGTGAAAAAGCTTACATCCATGAATACAAGCTTAGACTCCATTTGAAGAGGGAGCATCCGGGGCACATGTCTGATGAAAATACTGAGCATGCTCAGGTTAATGCTGACAATGAAATGGATGAAGCAAGTGACCAAGATGCATATGGTTCTGCATCATCTGATCGCCCCTATGCATGTCCTTATGAAGGATGTGAAAAAGCTTACATACATGAATACAAGCTTAGACTCCATTTGAAGAGGGAGCATCCAGGGCATATGTCTGATGAAAATACTGAGCATGCTCAGGTTAATGTTGACAATGAAATGGATGAAGCAAGTGACCAAGATGCCTACGGTGGGAAATGGTCAAATGGTAAAATTCAGAAGCAAAGTGGTCCCAAACCAAACCTCAAGTTGCCTCCTTCCAAAATTGCAAAACGCAAAGGGTCCACAGCCACTCTAACTGTAATTAACAAACATTTGCCTATGAAAGATGAAACCTTTGATGAAGAAGATAGCGAAGAAACAGAAGAAGAAGATCGGAATAATGTTGAGGATGGTTGGAGATATGCAGGAGGAAACAATGAAGATGACGATGAAGAAACAGAATATGAAGACTGA 1410 0.4213 MEIHYSQSYSERRPILKSKAPAVKWVKEWVPQDLVTTGGKCMLLKWVSEDTLKALKEREKEISVPEPEPEPTTEVLFLCSYDGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPYEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRFAHEYKLKNHVASHHEKNASVEVIKYTPPSEKQTKTTKPSGGAYGSASSDRPYACPYEGCEKAYIHEYKLRLHLKREHPGQMSDENAYACPYEGCEKAYIHEYKLRLHLKREHPGHMSDENTEHAQVNADNEMDEASDQDAYGSASSDRPYACPYEGCEKAYIHEYKLRLHLKREHPGHMSDENTEHAQVNVDNEMDEASDQDAYGGKWSNGKIQKQSGPKPNLKLPPSKIAKRKGSTATLTVINKHLPMKDETFDEEDSEETEEEDRNNVEDGWRYAGGNNEDDDEETEYED. 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06175 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Seca11g06175 469 SMART c2h2final6 77 101 IPR013087 -
Seca11g06175 469 SMART c2h2final6 264 289 IPR013087 -
Seca11g06175 469 SMART c2h2final6 166 190 IPR013087 -
Seca11g06175 469 SMART c2h2final6 136 160 IPR013087 -
Seca11g06175 469 SMART c2h2final6 229 254 IPR013087 -
Seca11g06175 469 SMART c2h2final6 106 130 IPR013087 -
Seca11g06175 469 SMART c2h2final6 327 352 IPR013087 -
Seca11g06175 469 Gene3D Classic Zinc Finger 77 102 - -
Seca11g06175 469 Gene3D Classic Zinc Finger 263 290 - -
Seca11g06175 469 FunFam Zinc finger transcription factor YY1 204 264 - -
Seca11g06175 469 FunFam zinc finger transcription factor YY1 163 194 - -
Seca11g06175 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Seca11g06175 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Seca11g06175 469 ProSitePatterns Zinc finger C2H2 type domain signature. 231 254 IPR013087 -
Seca11g06175 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 259 IPR013087 -
Seca11g06175 469 SUPERFAMILY beta-beta-alpha zinc fingers 224 252 IPR036236 -
Seca11g06175 469 SUPERFAMILY beta-beta-alpha zinc fingers 322 350 IPR036236 -
Seca11g06175 469 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Seca11g06175 469 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Seca11g06175 469 Gene3D Classic Zinc Finger 304 369 - -
Seca11g06175 469 Gene3D Classic Zinc Finger 201 262 - -
Seca11g06175 469 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Seca11g06175 469 SUPERFAMILY beta-beta-alpha zinc fingers 160 193 IPR036236 -
Seca11g06175 469 Gene3D Classic Zinc Finger 135 164 - -
Seca11g06175 469 Gene3D Classic Zinc Finger 165 195 - -
Seca11g06175 469 Gene3D Classic Zinc Finger 103 134 - -
Seca11g06175 469 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Seca11g06175 469 FunFam Zinc finger protein 410 134 161 - -
Seca11g06175 469 FunFam Zinc finger transcription factor YY1 307 369 - -
Seca11g06175 469 MobiDBLite consensus disorder prediction 203 220 - -
Seca11g06175 469 MobiDBLite consensus disorder prediction 196 226 - -
Seca11g06175 469 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Seca11g06175 469 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Seca11g06175 469 FunFam zinc finger transcription factor YY1 77 102 - -
Seca11g06175 469 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Seca11g06175 469 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Seca11g06175 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 264 294 IPR013087 -
Seca11g06175 469 ProSitePatterns Zinc finger C2H2 type domain signature. 266 289 IPR013087 -
Seca11g06175 469 ProSitePatterns Zinc finger C2H2 type domain signature. 329 352 IPR013087 -
Seca11g06175 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 327 357 IPR013087 -
Seca11g06175 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Seca11g06175 469 FunFam Putative zinc finger protein 143 103 133 - -
Seca11g06175 469 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 226 444 - -
Seca11g06175 469 MobiDBLite consensus disorder prediction 374 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06175 Seca-Chr11 162207192 162213032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06175 131 454 C2H2 Transcription Factor Family AT4G06634 39.823 7.28e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca11g06175 zf-C2H2 0.013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06175 - - gmx:100811480 534.258