Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06170 ATGGAAAGCATTGCCGCGCAATTGAAGCGCGGCATCTCGCGGCAATTCTCGTCGGGGTCGCTGCGGAAGAATCTGAGCCGGCAATTCACGCGCCAGGCTTCGCTCGATCCGCGGCGGAACAATCTCCGGTTCAGTTTCGGCCGGCAGTCGTCCCTTGACCCGATCCGGCGGAGTCCGGTTCATGACGAGGCCGAATTGACGGTGCCGGAGAACCTCGATTCGACGATGCAGCTGCTGTTCATGGCGTGCCGAGGGGACGTTAAGGGAGTGGAGGATTTGCTCAACGAAGGCATCGACGTCAATAGCATTGACCTTGACGGACGCACCGCACTCCACATCGCCGCCTGCGAGGGCCACGTCGACGTCGCCACGCTCTTGCTCAGCCGTAAGGCCAATATCGATGCTCGTGATCGTTGGGGCAGTACGGCAGCGGCTGATGCTAAATATTATGGAAATACGGAAGTTTATTATATGTTGAAGGCCCGTGGAGCAAAAGTGCCGAAAACCAGGAAGACTCCAATGACTGTTGCAAATCCTCGTGAAGTTCCAGAATATGAACTCAATCCGTTAGAACTGCAGGTTCGGAAGAGTGATGGTATTTCAAAGGGAACATATCAAGTAGCTAAATGGAATGGCACAAAAGTTGCAGTGAAGATACTTGATAAGGACAGTTATTCAGATCCTGATACCATAAATGCTTTCAAACATGAGCTCACGCTATTAGAAAGGGTACGCCATCCTAATGTGGTCCAGTTTGTTGGAGCTGTCACTCAAAATGTACCTATGATGATTGTTCGAGAGTACCATACTAAGGGTGACCTAGCAAGCTATCTTCAAAAGAAAGGGCGTTTGTCCCCATCAAAAGCTCTACGGTTTGCTCTTGATATTGCTAGGGGCATGAACTATCTTCATGAATGCAAACCGGATCCCATTCTCCACTGTGATTTAAAGCCAAAAAATGTTTTGCTGGATAATGGAGGGCAATTGAAGGTAGCTGGATTTGGCACTGTGAGATTCTCGCATATCTCACCCGATACAGCAAAGCTGGTACAGTCTGAGGCTAACATTGACCTTTCAAACTTGTACATGGCACCTGAGATTTACAAAGATGAAGTATTTGATAGAAGTGTGGATGCGTATTCCTTTGGTCTCATTGTCTATGAGATGATAGAGGGTATGCAGCCTTTACACCCCAAGCCCGCCGAGGAGGCTGTGAAACTATTGTGCTTAGAAGGGAAAAGACCAGTGTTCAAGATCAAAACAAAAAATTATCCTCCGGATTTGAAAGAGTTGATTGAGGAATGTTGGGATCCAGAACCTGTTGTCAGACCAACATTTTCTCAGGTCATTGTACGGTTGGATAGAATTGTTGCAAATTGCTCAAAGCAAGGATGGTGGAAAGATGCATTTAAACTTCCTTGGAAATAA 1428 0.4755 MESIAAQLKRGISRQFSSGSLRKNLSRQFTRQASLDPRRNNLRFSFGRQSSLDPIRRSPVHDEAELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVDVATLLLSRKANIDARDRWGSTAAADAKYYGNTEVYYMLKARGAKVPKTRKTPMTVANPREVPEYELNPLELQVRKSDGISKGTYQVAKWNGTKVAVKILDKDSYSDPDTINAFKHELTLLERVRHPNVVQFVGAVTQNVPMMIVREYHTKGDLASYLQKKGRLSPSKALRFALDIARGMNYLHECKPDPILHCDLKPKNVLLDNGGQLKVAGFGTVRFSHISPDTAKLVQSEANIDLSNLYMAPEIYKDEVFDRSVDAYSFGLIVYEMIEGMQPLHPKPAEEAVKLLCLEGKRPVFKIKTKNYPPDLKELIEECWDPEPVVRPTFSQVIVRLDRIVANCSKQGWWKDAFKLPWK. 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06170 475 Pfam Protein tyrosine and serine/threonine kinase 200 452 IPR001245 GO:0004672|GO:0006468
Seca11g06170 475 Gene3D Phosphorylase Kinase; domain 1 187 269 - -
Seca11g06170 475 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 144 456 - -
Seca11g06170 475 PRINTS Tyrosine kinase catalytic domain signature 305 323 IPR001245 GO:0004672|GO:0006468
Seca11g06170 475 PRINTS Tyrosine kinase catalytic domain signature 377 399 IPR001245 GO:0004672|GO:0006468
Seca11g06170 475 PRINTS Tyrosine kinase catalytic domain signature 424 446 IPR001245 GO:0004672|GO:0006468
Seca11g06170 475 PRINTS Tyrosine kinase catalytic domain signature 266 279 IPR001245 GO:0004672|GO:0006468
Seca11g06170 475 SMART serkin_6 194 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06170 475 FunFam serine/threonine-protein kinase STY46-like 187 270 - -
Seca11g06170 475 SUPERFAMILY Ankyrin repeat 75 175 IPR036770 -
Seca11g06170 475 FunFam Integrin-linked protein kinase family 270 469 - -
Seca11g06170 475 Gene3D Transferase(Phosphotransferase) domain 1 270 469 - -
Seca11g06170 475 SMART ANK_2a 74 102 IPR002110 GO:0005515
Seca11g06170 475 SMART ANK_2a 106 135 IPR002110 GO:0005515
Seca11g06170 475 Gene3D - 47 185 IPR036770 -
Seca11g06170 475 CDD STKc_MAP3K-like 200 453 - -
Seca11g06170 475 PIRSF ILK 8 474 - -
Seca11g06170 475 ProSiteProfiles Ankyrin repeat profile. 106 138 IPR002110 GO:0005515
Seca11g06170 475 ProSiteProfiles Ankyrin repeat region circular profile. 106 138 - -
Seca11g06170 475 ProSiteProfiles Protein kinase domain profile. 190 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06170 475 FunFam Integrin-linked protein kinase 1 47 185 - -
Seca11g06170 475 SUPERFAMILY Protein kinase-like (PK-like) 203 453 IPR011009 -
Seca11g06170 475 Pfam Ankyrin repeats (3 copies) 76 137 IPR002110 GO:0005515
Seca11g06170 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06170 Seca-Chr11 162159965 162168182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06170 1 474 MAP Kinase Kinase Kinase AT2G43850 77.824 0.0 809
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Seca11g06170 PK_Tyr_Ser-Thr 2.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06170 - - gmx:100810411 894.034