Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06159 ATGGGTAACTGCTGGTGTAGGTGTAAATCATCAGATTATAGAGTGTCATCTAATGCAAAGTCAGAACAAAATCAGGAAATCAAACAGAGGAATGATGATAGGAAGTTACCATCCAATCCTGAAGAAGTAGAAGATCTAAGGCGTGATTCAGCTGCAAATCCATTGATTGCATTCACTTATGAAGAGCTAAAGATAATCACTGGAAATTTTAGGCCAGATCGTGTGTTAGGTGGAGGGGGATTTGGAAGTGTTTATAAAGGGTTTATCTCTGAGGAGTTAAGGCAGGGTCTTCCTTCTCTTCCTGTAGCTGTTAAGGTTCATGATGGTGACAACAGTCATCAAGGCCACAGAGAATGGCTGGCAGAAGTCATATTTTTGGGGCAGCTTTCACATCCAAATCTAGTCAAATTAATTGGATACTGCTGTGAAGATGAACACAGGGTGCTAATATATGAGTATATGGCCCGGGGAAGTGTGGAACACAATTTGTTCTCAATTTTGCTTCCCATGCCATGGTCTATAAGAATGAAGATTGCATTTGGCGCTGCAAAGGGACTTGCATTTCTTCATGAAGCAGAGAAACCTGTCATCTACCGTGATTTTAAGACCTCAAATATTTTATTGGACACGGTCAGTACACTTAAATATTTATTATATCTAACAAAAAATAAAAGGAAAAAAAATTATACAATTTCTTTTGACATGTTTCAAAAACAGGACTATAATGCAAAACTTTCTGACTTTGGCCTTGCCAAAGATGGACCAGTTGGAGACAAATCCCATGTTTCTACTCGAATAATGGGAACATATGGTTATGCTGCACCTGAATACATAATGACAGGTCACTTGACACCAAGAAGTGATGTTTACAGTTTTGGTGTTGTTCTTCTTGAACTTCTGACTGGAAGAAAATCTCTAGACAAGTTAAGACCTGCTAGAGAGCAGAACCTTGCAGAGTGGGCTCTTCCTTTGCTGAAGGAAAAGAAGAAATTGCTTAACATCATAGATCCAAGGCTGGAAGGTGATTATCCTGTAAAAGGAGTTCACAAGGCTGCAATGCTTGCATATCATTGCTTGAATCGCAATCCAAAAGCAAGGCCTCTAATGAGAGACATTGTAGATTCATTGGAGCCTTTGATGGCATACAATGAGGTCTCAATTGAGAAAACATTTACCATAATCAGTGAGGTTCCTGAAGCTGATTTGAAAAACAAAGATGCAAAAAAATGA 1230 0.3886 MGNCWCRCKSSDYRVSSNAKSEQNQEIKQRNDDRKLPSNPEEVEDLRRDSAANPLIAFTYEELKIITGNFRPDRVLGGGGFGSVYKGFISEELRQGLPSLPVAVKVHDGDNSHQGHREWLAEVIFLGQLSHPNLVKLIGYCCEDEHRVLIYEYMARGSVEHNLFSILLPMPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDTVSTLKYLLYLTKNKRKKNYTISFDMFQKQDYNAKLSDFGLAKDGPVGDKSHVSTRIMGTYGYAAPEYIMTGHLTPRSDVYSFGVVLLELLTGRKSLDKLRPAREQNLAEWALPLLKEKKKLLNIIDPRLEGDYPVKGVHKAAMLAYHCLNRNPKARPLMRDIVDSLEPLMAYNEVSIEKTFTIISEVPEADLKNKDAKK. 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06159 409 PANTHER OS01G0588500 PROTEIN-RELATED 29 379 - -
Seca11g06159 409 MobiDBLite consensus disorder prediction 15 46 - -
Seca11g06159 409 MobiDBLite consensus disorder prediction 25 46 - -
Seca11g06159 409 FunFam Serine/threonine-protein kinase BIK1 37 153 - -
Seca11g06159 409 SUPERFAMILY Protein kinase-like (PK-like) 53 381 IPR011009 -
Seca11g06159 409 ProSiteProfiles Protein kinase domain profile. 70 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06159 409 Pfam Protein tyrosine and serine/threonine kinase 73 376 IPR001245 GO:0004672|GO:0006468
Seca11g06159 409 Gene3D Phosphorylase Kinase; domain 1 33 153 - -
Seca11g06159 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Seca11g06159 409 Gene3D Transferase(Phosphotransferase) domain 1 154 397 - -
Seca11g06159 409 ProSitePatterns Protein kinases ATP-binding region signature. 76 105 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06159 Seca-Chr11 162034699 162042487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06159 17 376 Glycoside Hydrolase AT3G07070 44.205 4.91e-100 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca11g06159 PK_Tyr_Ser-Thr 2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06159 - - gmx:100808795 661.759