Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06153 ATGACCTCTGTTCATGACCTCACTGATAATGAAGATGATGGGCAGCAGCAGTCAGAATCACCAATGCAGTCTTCATCTGCAAATGGAATTTCTGATCAAGGTATTGGTACCCAGAATATGGAATATGCAACACCTGGCCAGCTTGGAACTGGGCATCCTATGAAGGTACCACCTGTATATCCATATCCAGATCCTTATTATAGAAGCATCTTTGCTCCCTACGATACACAGCCTTATCCCCCACAATCCTATAATGGACAGCCAATGGTCCATCTTCAGTTAATGGGAATGCAGCAAGCCGGTGTTCCTCTTCCAACTGATGCAGTTGAGGAGCCTGTATTTGTCAATGCGAAACAATATCACGGTATATTAAGACGTAGACAATCCCGTGCCAAAGCTGAAACAGAAAATAAAGTTATAAGGAATCGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCTCTAAGAAGAGCAAGAGGATGTGGCGGTCGGTTTCTGAATGCAAAGAAAAATGAGAATCAACATGGTGATGTGGCATCACCTGACAAATCACAGTCCACTATCAATCTCAACTCTGATAGAAATGATCTTACTCCATCAGATAGGACATCCTGA 618 0.4304 MTSVHDLTDNEDDGQQQSESPMQSSSANGISDQGIGTQNMEYATPGQLGTGHPMKVPPVYPYPDPYYRSIFAPYDTQPYPPQSYNGQPMVHLQLMGMQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAETENKVIRNRKPYLHESRHLHALRRARGCGGRFLNAKKNENQHGDVASPDKSQSTINLNSDRNDLTPSDRTS. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06153 205 PRINTS CCAAT-binding transcription factor subunit B signature 143 166 IPR001289 GO:0003700|GO:0006355
Seca11g06153 205 PRINTS CCAAT-binding transcription factor subunit B signature 112 134 IPR001289 GO:0003700|GO:0006355
Seca11g06153 205 SMART cbf3 108 169 IPR001289 GO:0003700|GO:0006355
Seca11g06153 205 MobiDBLite consensus disorder prediction 167 205 - -
Seca11g06153 205 MobiDBLite consensus disorder prediction 179 199 - -
Seca11g06153 205 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 14 200 IPR001289 GO:0003700|GO:0006355
Seca11g06153 205 ProSiteProfiles NF-YA/HAP2 family profile. 109 169 IPR001289 GO:0003700|GO:0006355
Seca11g06153 205 ProSitePatterns NF-YA/HAP2 subunit signature. 114 134 IPR018362 GO:0003677|GO:0016602
Seca11g06153 205 Gene3D - 109 170 - -
Seca11g06153 205 MobiDBLite consensus disorder prediction 1 56 - -
Seca11g06153 205 MobiDBLite consensus disorder prediction 14 45 - -
Seca11g06153 205 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 111 166 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06153 Seca-Chr11 161930904 161937051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06153 2 205 CCAAT-HAP2 Transcription Factor Family AT1G30500 55.340 2.18e-69 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Seca11g06153 CBFB_NFYA 3.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06153 K08064 - gmx:100499754 345.895