Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06150 ATGCCAAAAACTCGATTTGTGCTTCCACTTATCGTCGTTAATCAAGTCACCAAGCCAAACAAATGTGGTACGACACCGTTTAGCACTGGAGAACGAGTTCGTATCTGTTTTCAAAACTCGTCAAGAACCTTTTCATTCACCATCCCTGCATCTTCTTTTTTTTCTTCTTCTTCTTCACCATGTATCTTCAAAATCAAATCACACAAGTCTTTACTCCTTCACCACCTCAACAATCAAAGGCTACACCAAGCTCGTGCTCTCTTCGACCAAATCCCTTCCCCTCACGTTTCACTCTACACCATCATGCTCCTCGCTTACGCCCAACACCACCAACTCTCCCAAGCTATCCACCTCTTTCGTCAAATCCCTAACAAGGATGTCATCTCATGGAACTCCATCATCAAGGCTTGTATCCAATGCGGCGATTTCCTCACCGCACGGAAACTGTTCGACGAAATGCCCCACAGAACCGTCGTGTCTTGGACCACCATGTTCGATGGCTTCTTGCGCTTCGGAAAAGTTGAGGACGCTGAAACCTTGTTCTGGGCAATGCCACATGATGACAGGGATGTTGCAGCGTGGAACGCCATGATTCATGGGTACTGTGCTAATGGTAGAATCGATGATGCTCTTCGCTTGTTTCACCAAATGCCTTCACGTGACGTGATTTCTTGGACTTCCATTATTTCTGGACTTGACCGTAATGGAAAGAGTGAACAAGCCTTGGCACTTTTTCAGAACATGGTGGCGTCTGGTGTTAACCCCTCTTCTACTACTTTGGTTTGCGGGTTGTCAGCTGCTGCAAAGGTTTCAGCTTTGCATGTGGGTCTTCAGATTCATTGCTCTATTTTCAAGTTGTTGGGTTATTGTTGTTTTGATGAGTTTGTATCTGCTTCGCTTGTCACGTTTTATGCAAGTTGTAAACGAATGGAGAGTGCTTGTAAGGTTTTTGCTGAGACAATTTGTAAGAATGTGGTGGTGTGGACAGCTATTGTGACAGGGTATGGTTTGAATGATAAGCATCAAGAGGCATTGGGGGTCTTTGGAGACATGATGAGAACCAATGTGGTACCAAATGAGTCTTCATTCACCAGTGCTTTGAATTCATGTTGTGGGTTGGAGGATATTGAGAAGGGGAGAGTGATCCATGCAGCAGCAATTAAGATGGGTTTGGAAAATGGTGTGTATGTGGGAGGTTCTCTTGTTGTCATGTATAGTAAATGTGGCTATATTCGTGATGCGGTGTCTGTGTTTGAGGGGATTAGTGAGAAAAGCATTGTCTCATGGAACTCGGTTATTGGAGGTTGTGCACAGCATGGATGTGGCATGTGGGCTTTAGCACTCTTTAACCAAATGCTGCGTGAAGGAGTTGATCCAGATGAAATCACGTTAACTGGTTTGCTTTCTGCTTGTAGCCGTTCTGGGATGTTACAGAAAGCAAGGTACTTTTTCAGATACTTTGGCATGAAAAGATCAATTTCACTGACAATTGAGCACTATGCATGTATGATGGATGTACTTGGCCGTTGTGGAGAACTGGAGGAAGCAGAAGCACTGGTGATGAGCATGCCTATGAGAGCAAATTCAATGGTATGGCTGGTTTTGCTGAGTGCATGCAGGATGCATTCTAATTTAGATGTAGCTGAAAGAGCTGCAAAACAGATATTTGAAATGGAGCCTGATTGCAGTGCTGCTTATGTGTTGCTATCAAACTTGTATGCATCTTCAAGCAAATGGTCTGAAGTAGCTAAGATAAGGAGAAGAATGAAACATAATGGAGTTGTGAAACAACCAGGATCCAGTTGGGTAACCTTAAAAGGATTAAGGCATGAGTTTCTCTCTGCAGATAGGTCACATCCTCTTACAGAGCAAATTTATCAGAAGCTAGACTGGTTAGGAGTGAAGTTGAAAGAATTAGGTTATGTTCCTGATCAACAATTCGCTTTACATGATGTTGAAATTGAACAAAAAGAAGAAATGCTGTCTTACCATAGTGAAAGGCTTGCAATTGCATTTGGGTTGCTTAGCACTGTGGAAGGCACTACTATAACAGTAATGAAAAATCTACGTGTATGTGGCGATTGTCATAATGCAATAAAACTTATGGCAAAGGTTGTTGACCGTGAGATTGTAGTAAGGGATTCTAGCCGCTTTCATCACTTTAAGAATGGTGTATGTTCTTGTGGGGATTATTGGTCTCTTACAGGTAAAAGAAGATTGAAGGATATATTGGTTCAAAAGGATAATCGCTTTTGTGCTGATTGTGGTGCTCCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTTATTGTATGCTTAAAATGTTGTGGTGTGCACAGAAGTCTTGGTACTCATATATCAAGGATTTTGTCCCTGACATTGGATGAATGGTCAAGTGATGAAGTTGATGCAATGATTGAAGTTGGAGGAAATGCTTCTGCCAATTCAATTTATGAGGCTTATATTCCGGAAGGATATACAAAACCTGGACCTGATGCCAGTCATGAGCAGCGTGCAAAATTCATCCGGTCAAAGTATGAGCATCAAGAATTTTTGAAACCTAGTTTGCGCATTGTGTCTGGGAAAAGCAATAATCAATCAAGTCTTTCTAAAAGGAATAATGATAGTATCCGAAGTACTAATAGTTCACAAAAAATGCAAGGAATGGTAGAATTTATTGGAATGTTGAAGGTGAAAGTGGTTAAAGGCACAGATTTAGCTATCAGAGATATGATGACGAGTGATCCGTATGTCATCTTGAAACTTGGCCAACAGACTGTTCAGACAAGTGTAATAAAGAGTAACTTGAATCCAGTCTGGAATGAGGATCTTATGCTGTCTGTTCCTCAGCAATTTGGACTATTGAGTTTGAAGGTATTTGATCATGACTTGTTTTCAGCTGATGATATAATGGGAGAAGCAGATATTGATCTTCAGCCCTTGATAACATCTGCAATGGCATTTGGAGATGCTGGAATGTTTGATGATATGCAAATAGGAAAATGGCTGAAATCCCATGACAATGCACTTATAGAAGATAGCATAGTCAATATTATTGATGGAAAGGTTAAACAAGACATGTCACTCAAGCTCCAGAATGTCGAATCTGGAGAATTAGACTTGGAACTCGAGTGGATATCCCTTGATCATTAA 3153 0.4145 MPKTRFVLPLIVVNQVTKPNKCGTTPFSTGERVRICFQNSSRTFSFTIPASSFFSSSSSPCIFKIKSHKSLLLHHLNNQRLHQARALFDQIPSPHVSLYTIMLLAYAQHHQLSQAIHLFRQIPNKDVISWNSIIKACIQCGDFLTARKLFDEMPHRTVVSWTTMFDGFLRFGKVEDAETLFWAMPHDDRDVAAWNAMIHGYCANGRIDDALRLFHQMPSRDVISWTSIISGLDRNGKSEQALALFQNMVASGVNPSSTTLVCGLSAAAKVSALHVGLQIHCSIFKLLGYCCFDEFVSASLVTFYASCKRMESACKVFAETICKNVVVWTAIVTGYGLNDKHQEALGVFGDMMRTNVVPNESSFTSALNSCCGLEDIEKGRVIHAAAIKMGLENGVYVGGSLVVMYSKCGYIRDAVSVFEGISEKSIVSWNSVIGGCAQHGCGMWALALFNQMLREGVDPDEITLTGLLSACSRSGMLQKARYFFRYFGMKRSISLTIEHYACMMDVLGRCGELEEAEALVMSMPMRANSMVWLVLLSACRMHSNLDVAERAAKQIFEMEPDCSAAYVLLSNLYASSSKWSEVAKIRRRMKHNGVVKQPGSSWVTLKGLRHEFLSADRSHPLTEQIYQKLDWLGVKLKELGYVPDQQFALHDVEIEQKEEMLSYHSERLAIAFGLLSTVEGTTITVMKNLRVCGDCHNAIKLMAKVVDREIVVRDSSRFHHFKNGVCSCGDYWSLTGKRRLKDILVQKDNRFCADCGAPDPKWASANIGVIVCLKCCGVHRSLGTHISRILSLTLDEWSSDEVDAMIEVGGNASANSIYEAYIPEGYTKPGPDASHEQRAKFIRSKYEHQEFLKPSLRIVSGKSNNQSSLSKRNNDSIRSTNSSQKMQGMVEFIGMLKVKVVKGTDLAIRDMMTSDPYVILKLGQQTVQTSVIKSNLNPVWNEDLMLSVPQQFGLLSLKVFDHDLFSADDIMGEADIDLQPLITSAMAFGDAGMFDDMQIGKWLKSHDNALIEDSIVNIIDGKVKQDMSLKLQNVESGELDLELEWISLDH. 1051
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06150 1050 ProSiteProfiles ARF GTPase-activating proteins domain profile. 737 851 IPR001164 GO:0005096
Seca11g06150 1050 SMART C2_3c 895 990 IPR000008 -
Seca11g06150 1050 Pfam DYW family of nucleic acid deaminases 640 732 IPR032867 GO:0008270
Seca11g06150 1050 MobiDBLite consensus disorder prediction 862 883 - -
Seca11g06150 1050 Gene3D C2 domain 892 1050 IPR035892 -
Seca11g06150 1050 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 126 160 IPR002885 -
Seca11g06150 1050 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 890 986 IPR035892 -
Seca11g06150 1050 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 892 1050 - -
Seca11g06150 1050 CDD C2_ArfGAP 893 1037 - -
Seca11g06150 1050 Pfam E motif 542 603 IPR046848 -
Seca11g06150 1050 NCBIfam pentatricopeptide repeat 193 222 IPR002885 -
Seca11g06150 1050 NCBIfam pentatricopeptide repeat 427 461 IPR002885 -
Seca11g06150 1050 NCBIfam pentatricopeptide repeat 326 360 IPR002885 -
Seca11g06150 1050 NCBIfam pentatricopeptide repeat 128 154 IPR002885 -
Seca11g06150 1050 NCBIfam pentatricopeptide repeat 223 256 IPR002885 -
Seca11g06150 1050 Pfam PPR repeat 128 155 IPR002885 -
Seca11g06150 1050 Pfam PPR repeat 159 185 IPR002885 -
Seca11g06150 1050 Pfam PPR repeat 98 125 IPR002885 -
Seca11g06150 1050 Pfam PPR repeat 500 524 IPR002885 -
Seca11g06150 1050 Pfam C2 domain 895 984 IPR000008 -
Seca11g06150 1050 SUPERFAMILY TPR-like 94 587 IPR011990 GO:0005515
Seca11g06150 1050 Gene3D Tetratricopeptide repeat domain 399 628 IPR011990 GO:0005515
Seca11g06150 1050 CDD ArfGap 740 846 - -
Seca11g06150 1050 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Seca11g06150 1050 FunFam stromal membrane-associated protein 1 isoform X1 732 857 - -
Seca11g06150 1050 Pfam Putative GTPase activating protein for Arf 738 853 IPR001164 GO:0005096
Seca11g06150 1050 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 190 669 IPR046960 GO:0003723|GO:0009451
Seca11g06150 1050 Pfam E+ motif 610 630 IPR046849 -
Seca11g06150 1050 Gene3D Tetratricopeptide repeat domain 170 275 IPR011990 GO:0005515
Seca11g06150 1050 Gene3D Tetratricopeptide repeat domain 280 379 IPR011990 GO:0005515
Seca11g06150 1050 Gene3D Tetratricopeptide repeat domain 51 169 IPR011990 GO:0005515
Seca11g06150 1050 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Seca11g06150 1050 Pfam PPR repeat family 424 472 IPR002885 -
Seca11g06150 1050 Pfam PPR repeat family 323 371 IPR002885 -
Seca11g06150 1050 Pfam PPR repeat family 220 260 IPR002885 -
Seca11g06150 1050 FunFam pentatricopeptide repeat-containing protein At5g46460, mitochondrial 399 632 - -
Seca11g06150 1050 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 224 IPR002885 -
Seca11g06150 1050 PRINTS HIV Rev interacting protein signature 768 785 IPR001164 GO:0005096
Seca11g06150 1050 PRINTS HIV Rev interacting protein signature 749 768 IPR001164 GO:0005096
Seca11g06150 1050 PRINTS HIV Rev interacting protein signature 789 810 IPR001164 GO:0005096
Seca11g06150 1050 SUPERFAMILY ArfGap/RecO-like zinc finger 737 854 IPR037278 -
Seca11g06150 1050 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 255 IPR002885 -
Seca11g06150 1050 ProSiteProfiles C2 domain profile. 872 991 IPR000008 -
Seca11g06150 1050 SMART arf_gap_3 738 859 IPR001164 GO:0005096
Seca11g06150 1050 Pfam PPR repeat 190 217 IPR002885 -
Seca11g06150 1050 Gene3D Arf GTPase activating protein 733 857 IPR038508 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca11g06150 Seca-Chr11 161900307 161913108 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06150 735 1050 C2H2 Transcription Factor Family AT4G21160 72.308 2.58e-173 508
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06150 - - gmx:100806042 1128.62