Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca11g06150 | ATGCCAAAAACTCGATTTGTGCTTCCACTTATCGTCGTTAATCAAGTCACCAAGCCAAACAAATGTGGTACGACACCGTTTAGCACTGGAGAACGAGTTCGTATCTGTTTTCAAAACTCGTCAAGAACCTTTTCATTCACCATCCCTGCATCTTCTTTTTTTTCTTCTTCTTCTTCACCATGTATCTTCAAAATCAAATCACACAAGTCTTTACTCCTTCACCACCTCAACAATCAAAGGCTACACCAAGCTCGTGCTCTCTTCGACCAAATCCCTTCCCCTCACGTTTCACTCTACACCATCATGCTCCTCGCTTACGCCCAACACCACCAACTCTCCCAAGCTATCCACCTCTTTCGTCAAATCCCTAACAAGGATGTCATCTCATGGAACTCCATCATCAAGGCTTGTATCCAATGCGGCGATTTCCTCACCGCACGGAAACTGTTCGACGAAATGCCCCACAGAACCGTCGTGTCTTGGACCACCATGTTCGATGGCTTCTTGCGCTTCGGAAAAGTTGAGGACGCTGAAACCTTGTTCTGGGCAATGCCACATGATGACAGGGATGTTGCAGCGTGGAACGCCATGATTCATGGGTACTGTGCTAATGGTAGAATCGATGATGCTCTTCGCTTGTTTCACCAAATGCCTTCACGTGACGTGATTTCTTGGACTTCCATTATTTCTGGACTTGACCGTAATGGAAAGAGTGAACAAGCCTTGGCACTTTTTCAGAACATGGTGGCGTCTGGTGTTAACCCCTCTTCTACTACTTTGGTTTGCGGGTTGTCAGCTGCTGCAAAGGTTTCAGCTTTGCATGTGGGTCTTCAGATTCATTGCTCTATTTTCAAGTTGTTGGGTTATTGTTGTTTTGATGAGTTTGTATCTGCTTCGCTTGTCACGTTTTATGCAAGTTGTAAACGAATGGAGAGTGCTTGTAAGGTTTTTGCTGAGACAATTTGTAAGAATGTGGTGGTGTGGACAGCTATTGTGACAGGGTATGGTTTGAATGATAAGCATCAAGAGGCATTGGGGGTCTTTGGAGACATGATGAGAACCAATGTGGTACCAAATGAGTCTTCATTCACCAGTGCTTTGAATTCATGTTGTGGGTTGGAGGATATTGAGAAGGGGAGAGTGATCCATGCAGCAGCAATTAAGATGGGTTTGGAAAATGGTGTGTATGTGGGAGGTTCTCTTGTTGTCATGTATAGTAAATGTGGCTATATTCGTGATGCGGTGTCTGTGTTTGAGGGGATTAGTGAGAAAAGCATTGTCTCATGGAACTCGGTTATTGGAGGTTGTGCACAGCATGGATGTGGCATGTGGGCTTTAGCACTCTTTAACCAAATGCTGCGTGAAGGAGTTGATCCAGATGAAATCACGTTAACTGGTTTGCTTTCTGCTTGTAGCCGTTCTGGGATGTTACAGAAAGCAAGGTACTTTTTCAGATACTTTGGCATGAAAAGATCAATTTCACTGACAATTGAGCACTATGCATGTATGATGGATGTACTTGGCCGTTGTGGAGAACTGGAGGAAGCAGAAGCACTGGTGATGAGCATGCCTATGAGAGCAAATTCAATGGTATGGCTGGTTTTGCTGAGTGCATGCAGGATGCATTCTAATTTAGATGTAGCTGAAAGAGCTGCAAAACAGATATTTGAAATGGAGCCTGATTGCAGTGCTGCTTATGTGTTGCTATCAAACTTGTATGCATCTTCAAGCAAATGGTCTGAAGTAGCTAAGATAAGGAGAAGAATGAAACATAATGGAGTTGTGAAACAACCAGGATCCAGTTGGGTAACCTTAAAAGGATTAAGGCATGAGTTTCTCTCTGCAGATAGGTCACATCCTCTTACAGAGCAAATTTATCAGAAGCTAGACTGGTTAGGAGTGAAGTTGAAAGAATTAGGTTATGTTCCTGATCAACAATTCGCTTTACATGATGTTGAAATTGAACAAAAAGAAGAAATGCTGTCTTACCATAGTGAAAGGCTTGCAATTGCATTTGGGTTGCTTAGCACTGTGGAAGGCACTACTATAACAGTAATGAAAAATCTACGTGTATGTGGCGATTGTCATAATGCAATAAAACTTATGGCAAAGGTTGTTGACCGTGAGATTGTAGTAAGGGATTCTAGCCGCTTTCATCACTTTAAGAATGGTGTATGTTCTTGTGGGGATTATTGGTCTCTTACAGGTAAAAGAAGATTGAAGGATATATTGGTTCAAAAGGATAATCGCTTTTGTGCTGATTGTGGTGCTCCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTTATTGTATGCTTAAAATGTTGTGGTGTGCACAGAAGTCTTGGTACTCATATATCAAGGATTTTGTCCCTGACATTGGATGAATGGTCAAGTGATGAAGTTGATGCAATGATTGAAGTTGGAGGAAATGCTTCTGCCAATTCAATTTATGAGGCTTATATTCCGGAAGGATATACAAAACCTGGACCTGATGCCAGTCATGAGCAGCGTGCAAAATTCATCCGGTCAAAGTATGAGCATCAAGAATTTTTGAAACCTAGTTTGCGCATTGTGTCTGGGAAAAGCAATAATCAATCAAGTCTTTCTAAAAGGAATAATGATAGTATCCGAAGTACTAATAGTTCACAAAAAATGCAAGGAATGGTAGAATTTATTGGAATGTTGAAGGTGAAAGTGGTTAAAGGCACAGATTTAGCTATCAGAGATATGATGACGAGTGATCCGTATGTCATCTTGAAACTTGGCCAACAGACTGTTCAGACAAGTGTAATAAAGAGTAACTTGAATCCAGTCTGGAATGAGGATCTTATGCTGTCTGTTCCTCAGCAATTTGGACTATTGAGTTTGAAGGTATTTGATCATGACTTGTTTTCAGCTGATGATATAATGGGAGAAGCAGATATTGATCTTCAGCCCTTGATAACATCTGCAATGGCATTTGGAGATGCTGGAATGTTTGATGATATGCAAATAGGAAAATGGCTGAAATCCCATGACAATGCACTTATAGAAGATAGCATAGTCAATATTATTGATGGAAAGGTTAAACAAGACATGTCACTCAAGCTCCAGAATGTCGAATCTGGAGAATTAGACTTGGAACTCGAGTGGATATCCCTTGATCATTAA | 3153 | 0.4145 | MPKTRFVLPLIVVNQVTKPNKCGTTPFSTGERVRICFQNSSRTFSFTIPASSFFSSSSSPCIFKIKSHKSLLLHHLNNQRLHQARALFDQIPSPHVSLYTIMLLAYAQHHQLSQAIHLFRQIPNKDVISWNSIIKACIQCGDFLTARKLFDEMPHRTVVSWTTMFDGFLRFGKVEDAETLFWAMPHDDRDVAAWNAMIHGYCANGRIDDALRLFHQMPSRDVISWTSIISGLDRNGKSEQALALFQNMVASGVNPSSTTLVCGLSAAAKVSALHVGLQIHCSIFKLLGYCCFDEFVSASLVTFYASCKRMESACKVFAETICKNVVVWTAIVTGYGLNDKHQEALGVFGDMMRTNVVPNESSFTSALNSCCGLEDIEKGRVIHAAAIKMGLENGVYVGGSLVVMYSKCGYIRDAVSVFEGISEKSIVSWNSVIGGCAQHGCGMWALALFNQMLREGVDPDEITLTGLLSACSRSGMLQKARYFFRYFGMKRSISLTIEHYACMMDVLGRCGELEEAEALVMSMPMRANSMVWLVLLSACRMHSNLDVAERAAKQIFEMEPDCSAAYVLLSNLYASSSKWSEVAKIRRRMKHNGVVKQPGSSWVTLKGLRHEFLSADRSHPLTEQIYQKLDWLGVKLKELGYVPDQQFALHDVEIEQKEEMLSYHSERLAIAFGLLSTVEGTTITVMKNLRVCGDCHNAIKLMAKVVDREIVVRDSSRFHHFKNGVCSCGDYWSLTGKRRLKDILVQKDNRFCADCGAPDPKWASANIGVIVCLKCCGVHRSLGTHISRILSLTLDEWSSDEVDAMIEVGGNASANSIYEAYIPEGYTKPGPDASHEQRAKFIRSKYEHQEFLKPSLRIVSGKSNNQSSLSKRNNDSIRSTNSSQKMQGMVEFIGMLKVKVVKGTDLAIRDMMTSDPYVILKLGQQTVQTSVIKSNLNPVWNEDLMLSVPQQFGLLSLKVFDHDLFSADDIMGEADIDLQPLITSAMAFGDAGMFDDMQIGKWLKSHDNALIEDSIVNIIDGKVKQDMSLKLQNVESGELDLELEWISLDH. | 1051 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca11g06150 | 1050 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 737 | 851 | IPR001164 | GO:0005096 | |
Seca11g06150 | 1050 | SMART | C2_3c | 895 | 990 | IPR000008 | - | |
Seca11g06150 | 1050 | Pfam | DYW family of nucleic acid deaminases | 640 | 732 | IPR032867 | GO:0008270 | |
Seca11g06150 | 1050 | MobiDBLite | consensus disorder prediction | 862 | 883 | - | - | |
Seca11g06150 | 1050 | Gene3D | C2 domain | 892 | 1050 | IPR035892 | - | |
Seca11g06150 | 1050 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 126 | 160 | IPR002885 | - | |
Seca11g06150 | 1050 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 890 | 986 | IPR035892 | - | |
Seca11g06150 | 1050 | FunFam | ADP-ribosylation factor GTPase-activating protein AGD12 | 892 | 1050 | - | - | |
Seca11g06150 | 1050 | CDD | C2_ArfGAP | 893 | 1037 | - | - | |
Seca11g06150 | 1050 | Pfam | E motif | 542 | 603 | IPR046848 | - | |
Seca11g06150 | 1050 | NCBIfam | pentatricopeptide repeat | 193 | 222 | IPR002885 | - | |
Seca11g06150 | 1050 | NCBIfam | pentatricopeptide repeat | 427 | 461 | IPR002885 | - | |
Seca11g06150 | 1050 | NCBIfam | pentatricopeptide repeat | 326 | 360 | IPR002885 | - | |
Seca11g06150 | 1050 | NCBIfam | pentatricopeptide repeat | 128 | 154 | IPR002885 | - | |
Seca11g06150 | 1050 | NCBIfam | pentatricopeptide repeat | 223 | 256 | IPR002885 | - | |
Seca11g06150 | 1050 | Pfam | PPR repeat | 128 | 155 | IPR002885 | - | |
Seca11g06150 | 1050 | Pfam | PPR repeat | 159 | 185 | IPR002885 | - | |
Seca11g06150 | 1050 | Pfam | PPR repeat | 98 | 125 | IPR002885 | - | |
Seca11g06150 | 1050 | Pfam | PPR repeat | 500 | 524 | IPR002885 | - | |
Seca11g06150 | 1050 | Pfam | C2 domain | 895 | 984 | IPR000008 | - | |
Seca11g06150 | 1050 | SUPERFAMILY | TPR-like | 94 | 587 | IPR011990 | GO:0005515 | |
Seca11g06150 | 1050 | Gene3D | Tetratricopeptide repeat domain | 399 | 628 | IPR011990 | GO:0005515 | |
Seca11g06150 | 1050 | CDD | ArfGap | 740 | 846 | - | - | |
Seca11g06150 | 1050 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 425 | 459 | IPR002885 | - | |
Seca11g06150 | 1050 | FunFam | stromal membrane-associated protein 1 isoform X1 | 732 | 857 | - | - | |
Seca11g06150 | 1050 | Pfam | Putative GTPase activating protein for Arf | 738 | 853 | IPR001164 | GO:0005096 | |
Seca11g06150 | 1050 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 190 | 669 | IPR046960 | GO:0003723|GO:0009451 | |
Seca11g06150 | 1050 | Pfam | E+ motif | 610 | 630 | IPR046849 | - | |
Seca11g06150 | 1050 | Gene3D | Tetratricopeptide repeat domain | 170 | 275 | IPR011990 | GO:0005515 | |
Seca11g06150 | 1050 | Gene3D | Tetratricopeptide repeat domain | 280 | 379 | IPR011990 | GO:0005515 | |
Seca11g06150 | 1050 | Gene3D | Tetratricopeptide repeat domain | 51 | 169 | IPR011990 | GO:0005515 | |
Seca11g06150 | 1050 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 324 | 358 | IPR002885 | - | |
Seca11g06150 | 1050 | Pfam | PPR repeat family | 424 | 472 | IPR002885 | - | |
Seca11g06150 | 1050 | Pfam | PPR repeat family | 323 | 371 | IPR002885 | - | |
Seca11g06150 | 1050 | Pfam | PPR repeat family | 220 | 260 | IPR002885 | - | |
Seca11g06150 | 1050 | FunFam | pentatricopeptide repeat-containing protein At5g46460, mitochondrial | 399 | 632 | - | - | |
Seca11g06150 | 1050 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 190 | 224 | IPR002885 | - | |
Seca11g06150 | 1050 | PRINTS | HIV Rev interacting protein signature | 768 | 785 | IPR001164 | GO:0005096 | |
Seca11g06150 | 1050 | PRINTS | HIV Rev interacting protein signature | 749 | 768 | IPR001164 | GO:0005096 | |
Seca11g06150 | 1050 | PRINTS | HIV Rev interacting protein signature | 789 | 810 | IPR001164 | GO:0005096 | |
Seca11g06150 | 1050 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 737 | 854 | IPR037278 | - | |
Seca11g06150 | 1050 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 225 | 255 | IPR002885 | - | |
Seca11g06150 | 1050 | ProSiteProfiles | C2 domain profile. | 872 | 991 | IPR000008 | - | |
Seca11g06150 | 1050 | SMART | arf_gap_3 | 738 | 859 | IPR001164 | GO:0005096 | |
Seca11g06150 | 1050 | Pfam | PPR repeat | 190 | 217 | IPR002885 | - | |
Seca11g06150 | 1050 | Gene3D | Arf GTPase activating protein | 733 | 857 | IPR038508 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca11g06150 | Seca-Chr11 | 161900307 | 161913108 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca11g06150 | 735 | 1050 | C2H2 Transcription Factor Family | AT4G21160 | 72.308 | 2.58e-173 | 508 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca11g06150 | - | - | gmx:100806042 | 1128.62 |