Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06149 ATGGATTCTCCGAAAGAGGAAACTGAGGGAACATCAACATGGGCAGCAAAAAACAAAGAGAAATTTTCACACAAAGAGGAGGTGTTGCGTTTGATTGGTATAAGGGATTTTATCAGCCTCTTGTTGACTTATCCAGTCAAATTAGAAGAGGAAGGCAAATTAAAGGCATGGATTAGTGCATTTAACACCCAATGGAGACCTAAATTACTGACAACTGATGATGAATATGGTGTGAATGTGACAGAAAAACCATGGCATGTACTGACCGGGAAGGCACTAAAATGTATGGAAGGGTTTATGCCAATGGAAATAATAAGTCAAATTGAACATAGTGGGAGGCCCATCTTCTACCATCAAAATGATGTACCAGGAGCCATTCTCAATTTAACTGGTGATCTTGCAGTTGAGCAACTGATTCAAACGTTGTTTTCTAGAGATGATTATGTACGCTATGTGAGGCTATCAACCAGACACGATTTTGAAAAAATATCCGTGTTTTACAAAATAACAGCTGCCTTGGAAGACATACACAACCTGTTTGGAATTGATAAACATTTTCTTAGAGCCCTATGGATTGATGCCTCAAAATATGAGAGTGATGCAGAGGTTCAAGTTCAACAACAAATCAATGCAGTGATGGCAGGAATGGTGACACAAGGTGTTGAGGAAGAGATAAAAAGCAACAAATATTTGGTGATTCTAGTGGATAGAGATGGTAACAAAAGGCTAGACCCCACAAAAGTGCATTTCCCTGATGGAACTGTGGTGTTGATAACAACTGAAACTGAACTATCAGCACAGGCAGAGGAGGGTGATGATGAATTTACAATTACATGCACAATGGATTTGAATATCAGGACCCGAGATCATCTCCTGTCTTGGGAAGTCTTTTGCAGCTACGTAGGAAGTGACATTGAACATTGGGCCATTCAGAGAATTGCAGTGCAAATAGTCAAGGAATGTCATGGCCATCTTCTTGCCATTGTCCTTGTGGCAAAGTTTTTGAAGAATGTGGAACAATGGGAACCTGCACTGGTCAAATTAAGGCGCACGAATCCTTTCTATCAGAGTGATTTAATTGGCATTAGCAAAGCCATGGTCAATGTATTCATAAATATCATTTGGGAAGGCATGAAAAAGACACAAAAGCTTTGCCTTGAACTCAGTTTGTTTGTTCACAATATTAAAACTGGGGTGCCACGTGAGACCTTGATGTCTAATTGGGTCAGTACTGAATTATCACACAAACATGAAGTGGCACAGCGTCTCTTCCCATTTGGTTATGGTGATGCTAGACTAGAATACACAATGGAAAAAGCATGCTATGACATCAATGAGATTATAGGTCGTTCTATCTTGTTCGAAAGTGGAAGTAGTGGCTATGTTCGTTTGCCAATAGAAACCTATGATATAATAGAATCCATACACAAATTGAATCCTAGCATCATAATGAGTGGTGCATTAGGATTGACAGAGCCACCATACATTGGACGATGGCATGGTCTTATTCGAATTGAATTGATGGACAATAAAATATGTGAGCTACCACAATCACCAATTTGCCCCAAACTCATTGTGTTGCTATTGCAAGGGAATGCTGATTTGATGGATATTCCTGACTTATTTTTCAACCACATGCCTCTGCTCGAATACTTGGACTTATCCTACACTAGTATAAGGGATTTGCCCTCTTCTATCTCCAAGTTGATACAACTTAAGAAATTTTTTCTTAGAGGGTGTGATCTTTTTATGGAACTACCACCAGAAATTGGACATCTGAAGAATCTTGAAGAGCTTGATCTTGATGGGACTTTGATAACACATCTGCCAATGGAGATCCAAGAATTGATCAACTTGAAAAGTTTGACCCTCTGCTTTGAAGGATACTATCATGCACTTGGTCATGGCAAAGAAGGCAAGCAAATTTCCAATTCAACAATTATTCCTCCAGAAGTGATATCAAATCTTACTCAACTGAATTATTTAAGTATCAATGTTGATCCTGATGATGAGAGATGGAATGAGGATGTGTTTAACATTTTATTGGAAATCTTAGGATTAGAAAGGTTGAAGAGGGTTAGTTTATATGTCCCAAAGGTTGAATTTTTGGAACTCATACCATCCCAGTCCCACACATCCCTTGATTTCAGATTGATTGTTGGTCATCACATGCGACGTTTCATATCACGTGTAACACCTCAAGTGGAGGAAAAGTTCAAACATTGTGACCATAGTATAAAATTTGTGAATGGCATAAATGTACCAAATGGAGTGAAAATGCATCTGGAACGTTTCAAGGCTTTATACTTGGACAGACATATGACCATCAAGAGTCTCTCTGAATTCCAGTTGAAGAATCTGTACATGCTGCGAGTATGCATATTGGCAGAATGTAATGAAATGGAGACAATTGTTGATGGGAGTTATTCAGATGATGAATGTGCCCTTCCAAATTTGGAGTTTTTGAGTGTATTCTATATGAGGAATTTAAGAAGCATTCACAAAGGGACTCCTCCTCCTCAATTGCAATGCTTGAAGACTATAGCATTACACACTTGCCCCATGTTAACTACCATCTTTACCTTAAGTTTTATCTCCACTCTTTCCCAACTGGAGGAGCTTATCATTGAAGACTGTCCAAAAGTGACCACCCTCATAAGTCATGACTCATCAGAACATGAAACACATATTCTCTTCCCTAGGTTGAAAAGGATTACACTTGCATATCTTCCTGAATTGGTCAACATTTTTAATGGCTTGCATGTTGAACATGGCTTAGAAATAATGGGGTTTTATTATTGTCCAAAACTCCAAACTCTCTCAAAATCAGAATTGTCAAGCAAAGATCTGAGGGTCATCAAAGGAGAAGGAAGGTGGTGGAAAGCATTAAAATGGGATAAAGCAGAGTGGGGATGTGCAGATCGACCCAATTTTATCAATGGAATTTTTTTCCCAATCAATGAGGAGGCTGACATAATGAGCCAACTAGCTGCACATGACAAGAAGGACCAGCTTTGCAGGACCTCAGCGGAGTTTTCCTTGGCTCTAACTAACCTGGAAGTTAATGAGCATAAAGATATTTTTCTTGGCCAAGTTGTTTATAACAAAGATGAAGCTTATGCCTTGTACCAAGAACATGCATTCAAAATGGGTTTTAGTGTGAGAAAAGGGAGGGAGTTGTATTATGATATTGAAAAAAAGAACACTCGTTTGAAGGATTATTATTGCTCTAAACAAGGGTTTAAGAACAATGAACTTGTAGGTGAAGTGGCTTATGAAAGAGCAGATTCAAGAACAGATTGCAAAGCTATGGTGAGATTTAATGTGAGTAAGGATGGAGTATGGAAAATTACAAAGTTAGAACTGAATCATAACCATGACTTTGTGCCACAAGAGCAAAGACATTTGCTACGTTCTATGAGAGGCGTATCAAATGCCAAAGGAGGCCTCATTAAATCCATGGTGAATGCAGGTATGAAAGTTACAAATATTTGGAGTTATTTGGGGGAAGAGGTTGGTGGATTTGATAATCTTGGTATTACAATGAAAGATATGCATAATTATGTCTACTCTGAAAAGTTGAAATTAATTGATGCTGGTGATGCTCAGGCTTTAGTGAATCACTTGCAAAGTAGACAGGCACAAGATGCAATGTTCTACTATAGTGTGCAATTAGACCAGGAATCACGTTTGACTAATGTATTTTGGAGAGATGGTAAATCTAAAGTTGATTATGATTGCTTTGGGGATGTTGTGATTTTTGACACCACTTACCGTACCAATAAATATAACTTGATTTGTGCCCCCTTTGTTGGTGTAAATCATCATTGGCAAAATGTCATGTATGGTTGTGCTTTGTTATCTGATGAAACTGCAATTTCTTTCACTTGGTTGTTCAAAGTGTTTTTGGAAAGTATGGGAAACCAACAACCAAAAACCATCTTTACAGATCAAGATGCAGCTATGGCAAAAGCAATTGGAGAGGTAATGCCAAACACATGTCATCGATTATGCTTGTGGCATATAGCAAAAAATGCTCCTTCTCATTTGGGTTCTCTAAATTCTGACAATAAGTTTCAAAGCTTATTCAATAAATGCATGAAAGGTTGTGATTCAGAAGAAGAATTTCAAAGCACTTGGGATGAAATGATAAATGAGTATAAACTTCATGATCATCAATGGTTGAGCAATATGTATAAAATTCGTCACAAGTGGAGCACTGCTTTTAGCAAGAATATATTTTCTGCAGGTATCAAGTCTTCTCAAAGGAGCGAAAGTACAAACAGTGTGTTGGGTGAGATTGCAGGAAAAACAACAAGTCTCACACAATTCTTAGTGGCATTTGAGAAGATGGTAAAAAAGTGGCGCTACTTAGAAGTTGAGAAAGAATTCAAAAATAGTCAAAGTGCACCTCCTCATATTATAAATATTAGTGAGACTCTACGACATGCATCTTTGATATATACTCATAAGATATTTAAACTATTTTTGAATGAATATCTTGAAGGGACAGGTGGAAGCACTTCTATGGAGATTGGTGGGTGTAATAATGTGTCATATCATGAAGTTATTTTCAACCATATGCCTAATAAGAAGTATCAGGTAACATTTGACTCTTCCACTATGATGATTAATTGCAGCTGTCACAAGTTTGATTCTATGGGTATTCTGTGTAGTCATGCCTTGCGAATTTACAACATTAAAGGTATTTTAAAAATACCCGACCAATACTTCTTAAAAAGATGGTCAAAAAGTGCAAGGTCCATGATTTATGAGCACATAAATAGGGGTTCGAAAGAAGATTCTAGCTCTAATGTCATTAACTCAATGACCAATGGTGATGATGCTGGTATTCTTTATCGCAATGCTATTATGAAGTCATTTTATAATCTGGTTTTGGAAACTCAAGAACACAAAGAAACTCAGCAAATTATGTGGAAATTGCTTAATATTGGAGTTGAGCAAGTGCAACAATGTATTGGTAAGCTCAATTTAAATTCAAATGCAGAAACCATTGAGAACAAATTCACTCAAATTGAGGATAATGAATGGGCTGCAATTTTTAATCCTCCTCTTGCAAAGACCAAAGGAATGTCTACTGCTCGCAAGAAGGGGCATTTTGAGAAAAGGAAGCGATCAACCACAAAAACAAAGCAAAATAAAGAGAAACAAAAAGAAGATGGGTTTTGTGCTGTTAATTCTTCTACAATTGAGCTAACTAATGTTTTGAATTGCATGGATAAGTCAGGAAGTTATCCTAATTCTGACATTGATCTACAATCTACAGAAGCAACCATTCCTGATATTGATACTGATATTGATAACTTAGGTCTTTTTAAATTGAAATTGAAATGGGTGGTGTTATCTGCAGTTCCAAATATTTGCAGTTCCTGA 5394 0.3732 MDSPKEETEGTSTWAAKNKEKFSHKEEVLRLIGIRDFISLLLTYPVKLEEEGKLKAWISAFNTQWRPKLLTTDDEYGVNVTEKPWHVLTGKALKCMEGFMPMEIISQIEHSGRPIFYHQNDVPGAILNLTGDLAVEQLIQTLFSRDDYVRYVRLSTRHDFEKISVFYKITAALEDIHNLFGIDKHFLRALWIDASKYESDAEVQVQQQINAVMAGMVTQGVEEEIKSNKYLVILVDRDGNKRLDPTKVHFPDGTVVLITTETELSAQAEEGDDEFTITCTMDLNIRTRDHLLSWEVFCSYVGSDIEHWAIQRIAVQIVKECHGHLLAIVLVAKFLKNVEQWEPALVKLRRTNPFYQSDLIGISKAMVNVFINIIWEGMKKTQKLCLELSLFVHNIKTGVPRETLMSNWVSTELSHKHEVAQRLFPFGYGDARLEYTMEKACYDINEIIGRSILFESGSSGYVRLPIETYDIIESIHKLNPSIIMSGALGLTEPPYIGRWHGLIRIELMDNKICELPQSPICPKLIVLLLQGNADLMDIPDLFFNHMPLLEYLDLSYTSIRDLPSSISKLIQLKKFFLRGCDLFMELPPEIGHLKNLEELDLDGTLITHLPMEIQELINLKSLTLCFEGYYHALGHGKEGKQISNSTIIPPEVISNLTQLNYLSINVDPDDERWNEDVFNILLEILGLERLKRVSLYVPKVEFLELIPSQSHTSLDFRLIVGHHMRRFISRVTPQVEEKFKHCDHSIKFVNGINVPNGVKMHLERFKALYLDRHMTIKSLSEFQLKNLYMLRVCILAECNEMETIVDGSYSDDECALPNLEFLSVFYMRNLRSIHKGTPPPQLQCLKTIALHTCPMLTTIFTLSFISTLSQLEELIIEDCPKVTTLISHDSSEHETHILFPRLKRITLAYLPELVNIFNGLHVEHGLEIMGFYYCPKLQTLSKSELSSKDLRVIKGEGRWWKALKWDKAEWGCADRPNFINGIFFPINEEADIMSQLAAHDKKDQLCRTSAEFSLALTNLEVNEHKDIFLGQVVYNKDEAYALYQEHAFKMGFSVRKGRELYYDIEKKNTRLKDYYCSKQGFKNNELVGEVAYERADSRTDCKAMVRFNVSKDGVWKITKLELNHNHDFVPQEQRHLLRSMRGVSNAKGGLIKSMVNAGMKVTNIWSYLGEEVGGFDNLGITMKDMHNYVYSEKLKLIDAGDAQALVNHLQSRQAQDAMFYYSVQLDQESRLTNVFWRDGKSKVDYDCFGDVVIFDTTYRTNKYNLICAPFVGVNHHWQNVMYGCALLSDETAISFTWLFKVFLESMGNQQPKTIFTDQDAAMAKAIGEVMPNTCHRLCLWHIAKNAPSHLGSLNSDNKFQSLFNKCMKGCDSEEEFQSTWDEMINEYKLHDHQWLSNMYKIRHKWSTAFSKNIFSAGIKSSQRSESTNSVLGEIAGKTTSLTQFLVAFEKMVKKWRYLEVEKEFKNSQSAPPHIINISETLRHASLIYTHKIFKLFLNEYLEGTGGSTSMEIGGCNNVSYHEVIFNHMPNKKYQVTFDSSTMMINCSCHKFDSMGILCSHALRIYNIKGILKIPDQYFLKRWSKSARSMIYEHINRGSKEDSSSNVINSMTNGDDAGILYRNAIMKSFYNLVLETQEHKETQQIMWKLLNIGVEQVQQCIGKLNLNSNAETIENKFTQIEDNEWAAIFNPPLAKTKGMSTARKKGHFEKRKRSTTKTKQNKEKQKEDGFCAVNSSTIELTNVLNCMDKSGSYPNSDIDLQSTEATIPDIDTDIDNLGLFKLKLKWVVLSAVPNICSS. 1798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06149 1797 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1025 1657 IPR031052 GO:0006355
Seca11g06149 1797 Pfam MULE transposase domain 1251 1345 IPR018289 -
Seca11g06149 1797 Coils Coil 1662 1682 - -
Seca11g06149 1797 Gene3D Ribonuclease Inhibitor 469 678 IPR032675 -
Seca11g06149 1797 ProSiteProfiles Zinc finger SWIM-type profile. 1533 1569 IPR007527 GO:0008270
Seca11g06149 1797 Pfam Leucine rich repeat 522 582 IPR001611 GO:0005515
Seca11g06149 1797 SMART LRR_typ_2 593 616 IPR003591 -
Seca11g06149 1797 SMART LRR_typ_2 546 569 IPR003591 -
Seca11g06149 1797 Pfam FAR1 DNA-binding domain 1042 1129 IPR004330 -
Seca11g06149 1797 Pfam NB-ARC domain 217 350 IPR002182 GO:0043531
Seca11g06149 1797 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 352 IPR027417 -
Seca11g06149 1797 Gene3D - 290 375 IPR042197 -
Seca11g06149 1797 Pfam SWIM zinc finger 1533 1564 IPR007527 GO:0008270
Seca11g06149 1797 SMART 26again6 1544 1571 IPR006564 GO:0008270
Seca11g06149 1797 SUPERFAMILY L domain-like 490 941 - -
Seca11g06149 1797 Gene3D Ribonuclease Inhibitor 753 955 IPR032675 -
Seca11g06149 1797 MobiDBLite consensus disorder prediction 1696 1725 - -
Seca11g06149 1797 MobiDBLite consensus disorder prediction 1699 1718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06149 Seca-Chr11 161883346 161897211 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06149 493 629 Receptor kinase-like Gene Family AT4G36180 34.043 1.62e-07 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g06149 NB-ARC 1.2e-05 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06149 - - gmx:102668266 1187.56