Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06123 ATGTCCATGACTCCATCCGAGAGCGAAACCAAGAAGAAGAAGCATCGCAGTCGCAGCAAACATGAAGAAAGTGAAGGACAAGAAGAGGCCAAGGAGCAGAAAGAGGACCTCTTCATGATCAAACCCCAGAAGTTTACAACCCCAATCGACACTTCCGAATGGCCCATTCTCCTCAAAAACTACGAGCGCCTCAACGTACGCACCGGACACTACACCCCTCTCCCCTCCGGTTACTCCCCTCTCAAACGCCCTCTCACTGAGTACCTCAAGTACGGTGTCCTCAACCTTGACAAGCCCGCTAACCCTTCTTCCCATGAGGTTGTCGCTTGGATCAAACGGATCCTCCGTGTCGAAAAAACCGGTCACAGCGGCACCCTCGACCCCAAAGTCACCGGAAACCTCATTGTCTGCATTGACAGAGCCACCCGCTTGGTCAAGTCTCAACAGGGTGCTGGCAAAGAGTACGTTTGTGTTGCTCGCTTGCACTCCTCTGTCCCTGATGTCTCCAAGGTCGCTCGCGCCCTCGAGACCCTCACTGGTGCTGTCTTTCAACGGCCACCGTTGATTTCCGCCGTCAAGCGTCAACTCAGGATCAGGACCATCTATGAAAGTAAGCTACTTGAGTATGACCCTGATAAGCATTTAGTTGTTTTTTGGATTTCCTGTGAGGCTGGTACTTATGTTAGGACCATGTGTGTTCATTTGGGTTTGGTGCTTGGTGTGGGTGGCCACATGCAGGAGCTTAGGAGGGTTAGGTCTGGGATTATGGGTGAGAAGGATAACATGGTTTCTATGCATGATGTTATGGATGCTCAGTGGGTTTATGATAATTACCGGGATGAGACTTATTTGAGGAGGGTTGTCATGCCTTTGGAGGTTCTTTTGACTAGTTATAAGAGATTGGTTGTCAAGGATTCTGCTGTCAATGCCATTTGTTATGGTGCCAAGTTGATGATTCCTGGCTTGCTCAGGTTTGAGAATGATATTGAGGTAGGGGAGGAGGTTGTGCTTATGACCACCAAGGGTGAAGCTATTGCTCTTGGGATTGCTGAGATGACTACTGCTGTGATGGCAACTTGTGATCATGGTGTGGTGGCCAAGATCAAGAGGGTGGTCATGGATAGGGATACCTATCCCAGGAAATGGGGTTTGGGCCCCAGGGCTTCTATGAAGAAGAAAATGATTGCTGAAGGGAAGCTGGATAAGCATGGCAAGCCAAATGAGAAAACTCCCAAAGAGTGGCTCAGGAATGTGGTTTTGCCCACTGGTGGGGATAGCGTGATTGCAGGTATGGCTGCTGCGGATGAATCTGAAAAGGCCAAGAAAGAGACTGCTGTAAAAGAGGGTGAGAAGGATGCAGATGGGGAAGGGCGTAAAAGAAAGAAACACGGAAGTACTGATAGCCCTGTCTCCCTTCCTGCTAAGAAGGCGAAAGTTGATCAAGTTGAAGTGGTCGAGAAGCAGGAAACAGTGAAGCTGAAGAAAGTAAATGATGAAACGGTGGAGGTTGAAGTTGAGAAGAAGGAGAAGAAGAAGAAAAAGAAGAAGGATCAAGAGAATGGTGAAGTGGCATCTTCAGATGAGGAGAAAGCTGAAAAGAAGAAGAAGAAGAAGCACAAGGAAAAGGTTGAAGAGGGTTCTCCAGAGCTAGACAAATCTGAGAAGAAAAAGAAGAAGAAGAAAGACAAAGATACTGAAGACAATGCTGCTGAAATTAGTAACGGAAAGGATGACATTGGTGCTGCATCAGCAATTTCAGGAATCAATAATATCCGCTCATGGACCAATGAGAGCTTGCCACCTGCAGCTTCTGTTGCTACTATGGCTTGGACTCACCTTCCTGGCCATGGGACTTCCCTCTTTCGAAGAGCTTCGAAATGTGTAATTTTGCAGAGAACAATGGAGGCTTTTCTAATTATCGCTTCAGCCGCTCAACTTTTCTACATAGCTGCTATTCTTGGTGGTGCTGCCTATAGGAGATAA 1983 0.4766 MSMTPSESETKKKKHRSRSKHEESEGQEEAKEQKEDLFMIKPQKFTTPIDTSEWPILLKNYERLNVRTGHYTPLPSGYSPLKRPLTEYLKYGVLNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDKHLVVFWISCEAGTYVRTMCVHLGLVLGVGGHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNYRDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKMIAEGKLDKHGKPNEKTPKEWLRNVVLPTGGDSVIAGMAAADESEKAKKETAVKEGEKDADGEGRKRKKHGSTDSPVSLPAKKAKVDQVEVVEKQETVKLKKVNDETVEVEVEKKEKKKKKKKDQENGEVASSDEEKAEKKKKKKHKEKVEEGSPELDKSEKKKKKKKDKDTEDNAAEISNGKDDIGAASAISGINNIRSWTNESLPPAASVATMAWTHLPGHGTSLFRRASKCVILQRTMEAFLIIASAAQLFYIAAILGGAAYRR. 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06123 660 Pfam DKCLD (NUC011) domain 51 108 IPR012960 -
Seca11g06123 660 SMART pua_5 299 373 IPR002478 GO:0003723
Seca11g06123 660 Pfam TruB family pseudouridylate synthase (N terminal domain) 112 228 IPR002501 GO:0006396
Seca11g06123 660 Gene3D Pseudouridine synthase 84 290 - -
Seca11g06123 660 NCBIfam uncharacterized domain 2 293 370 IPR004521 GO:0003723
Seca11g06123 660 ProSiteProfiles PUA domain profile. 298 373 - -
Seca11g06123 660 Gene3D PUA domain 51 382 IPR036974 GO:0003723
Seca11g06123 660 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 12 561 IPR004802 GO:0006396
Seca11g06123 660 SMART DKCLD_2 50 108 IPR012960 -
Seca11g06123 660 SUPERFAMILY Pseudouridine synthase 51 296 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca11g06123 660 CDD PseudoU_synth_hDyskerin 90 272 - -
Seca11g06123 660 Coils Coil 493 513 - -
Seca11g06123 660 MobiDBLite consensus disorder prediction 502 575 - -
Seca11g06123 660 CDD PUA_Cbf5 297 371 - -
Seca11g06123 660 SUPERFAMILY PUA domain-like 298 379 IPR015947 -
Seca11g06123 660 MobiDBLite consensus disorder prediction 435 466 - -
Seca11g06123 660 FunFam H/ACA ribonucleoprotein complex subunit CBF5 84 290 - -
Seca11g06123 660 Pfam PUA domain 299 371 IPR002478 GO:0003723
Seca11g06123 660 Pfam tRNA pseudouridylate synthase B C-terminal domain 229 295 IPR032819 -
Seca11g06123 660 MobiDBLite consensus disorder prediction 19 36 - -
Seca11g06123 660 MobiDBLite consensus disorder prediction 434 481 - -
Seca11g06123 660 Pfam AWPM-19-like family 579 654 IPR008390 -
Seca11g06123 660 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 58 383 IPR004802 GO:0006396
Seca11g06123 660 MobiDBLite consensus disorder prediction 1 36 - -
Seca11g06123 660 MobiDBLite consensus disorder prediction 502 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06123 Seca-Chr11 161669895 161673121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06123 21 478 NAC Transcription Factor Family AT3G57150 81.739 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06123 K11131 - gmx:100806355 864.759