Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06119 ATGCCTCGTAAAGTAAACTATGGACTCGATTACTACGATGACGACTATGACGACGACTATGACGACTATGATTACGAAGACTATGGAGAAGGACCCAATACAAAGCAAGAGACCACTAAGCCTGGACTTTGGCGATGCTCCATTTGCACTTATGACAACGATGAGAGTATGACTTCCTGCGATATTTGTGGTGTTTTACGTCATCCTTCGGTTAACATTGGAACTTCCTGGAATAACAAAACAGTTGAAGACATAAGCAAAACTCCTGGAGTATCCAAGTTGGCCAGGTCTCTTTTTCATTCATTTCCACAACAGATTCCCAAAGACATTGTATTATTTCCAAAGCAGGGTGGTGGTTTTCAGACAGATGGCAGTAACTTCTACAAGCTTGAGAATGTCCAAGGAGAATTTCATGAAATTCATAAAGCTGTTAATACTCGAAGCCATCCCTATTTAAACATAGATGCTTTTAAGTTCGACGTTCCATCCCCAGATGATGTGGTTTATTCTGGCTTACATTCTTCCAAAATGGGTTTGAAAGGTATCCCTCCTTTATTAACCATAATGCTTTCAGACAAAGTTACAAACTCTAAAACTTCTCGGCTTTCATCAAGCATCAAAGAGAAGAACGAATTTTCTATACAATCAAATGCTGAAAGTTCAGACATATCATCCTTAGTGCAAAAGAACAAGCTTTCCAAAAATGTAGAAATTAATCTGGAAACAGTTGGTAAAACTTCAAACAGCTTACCGGCATCTTTGTCAAAGGACAGAGGTGACAATATGAATAAAATAAATTCTTCTGAAAGTGGTACAATTGATGTTCAATCAAGCAAAGAAAAGTCAGGTAGTTTGTCTTCATTACCAAAAGTCAAAGAAAGTGATGAGATTAGTTCCTCTTCTATCAAAGATGGAAAACCTGAAAGTGTTTCTAGCAGTTTTAACAACATGCATCTTAATGTAAGATCTGGAAATTCTGATAGTACTAATGCTAAGGGACCTCGTTCACAAGTTTCTTATAAGCCAGAAAAATGGATGCTCCCTCAACATGCTGAAGATACATTGACTCAGCTGAATCTTGCAATTGTTGGTCATGTTGATTCTGGAAAATCAACACTGTCCGGTAGGTTATTACACCTATCAGGACGAATTTCCCAGAAGGAAATGCACAAATATGAAAAGGAGGCCAAGTTACAGGGCAAGGGATCCTTTGCATATGCTTGGGCACTTGATGAAAGTTCAGAAGAAAGGGAAAGGGGAATAACTATGACTGTTGCTGTTGCATATTTTGACACTAGGAAATATCATGTAGTTGTGCTTGACTCCCCGGGCCATAAAGATTTTGTCCCAAACATGATTTCTGGGGCAACACAAGCTGATGCTGCAGTTCTTGTTATAGATGCCTCACTTGGTTCATTTGAAGCTGGTATGGATGGTAGCAAAGGACAAACGAGGGAACATGCACAACTTATTAGAAGCTTTGGTGTTGACCAGGTTATAGTTGCAGTAAATAAGATGGATGTTGTGGCATACTCCAAAGATCGATTTGATTTTATAAGACAGCAGTTAGGAATTTTTCTCCGCTCATGTGGATTCAAAGATTCTTCTATAAAATGGATTCCCATGAGTGCCATGGAAAATCAAAATTTGGTGGCATCCCCTTCTGATATTCGTTTCAAAAACTGGTATAGTGGACCTTATCTGTTAGATGCAATTGACTCACTCCAACCTCCTACTAGAGAATTCTCAAAACCTCTACTAATGCCGATATGTGATGTCATCAAATCAACTACACTAGGACAGGTGTCGGCTTGTGGTAAACTGGAAGCAGGAGCTCTTCGGAGTGGATCAAAGGTCTTAGTTATGCCTTCAGCTGTTGTGGGAACAGTACGCTCATTGGAGCGTGACTCTAATGCCTGCACTGTTGCAAGAGCTGGAGATAACGTAGCTGTGACGTTGCATGGTGTTGATGGAAGTCTTGTAATGGCAGGAGGTGTACTATGCCATCCTGACTTTCCTGTTGCAGTTTCAAAGCATTTGGAGTTGAAAGTGCTTGTCTTGGATGGTGCGAGTCCCATATTGGTGGGCGCTCAGTTAGAGTTTCATATACACCATGCAAAGGAACCTGCTAGAGTTTCAAGAATATTGTCAGTACTTGATCCCAAGACTGGTAAGGTGATCAAAAAGTCCCCTCGTTGTCTCACTGCAAAGCAAAGTGCAGTAATTGAGGTGACTTTGCAAGAGCCAGTCTGTGTGGTAGATTTCTCTAGTTGTAAAGCTCTTGGAAGGGTGTCCCTCAGATCATTAGGAAGAACTATCGCTGTTGGACTTGTGTCAAGAATAATTGAAGAGTAA 2355 0.4038 MPRKVNYGLDYYDDDYDDDYDDYDYEDYGEGPNTKQETTKPGLWRCSICTYDNDESMTSCDICGVLRHPSVNIGTSWNNKTVEDISKTPGVSKLARSLFHSFPQQIPKDIVLFPKQGGGFQTDGSNFYKLENVQGEFHEIHKAVNTRSHPYLNIDAFKFDVPSPDDVVYSGLHSSKMGLKGIPPLLTIMLSDKVTNSKTSRLSSSIKEKNEFSIQSNAESSDISSLVQKNKLSKNVEINLETVGKTSNSLPASLSKDRGDNMNKINSSESGTIDVQSSKEKSGSLSSLPKVKESDEISSSSIKDGKPESVSSSFNNMHLNVRSGNSDSTNAKGPRSQVSYKPEKWMLPQHAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLSGRISQKEMHKYEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTRKYHVVVLDSPGHKDFVPNMISGATQADAAVLVIDASLGSFEAGMDGSKGQTREHAQLIRSFGVDQVIVAVNKMDVVAYSKDRFDFIRQQLGIFLRSCGFKDSSIKWIPMSAMENQNLVASPSDIRFKNWYSGPYLLDAIDSLQPPTREFSKPLLMPICDVIKSTTLGQVSACGKLEAGALRSGSKVLVMPSAVVGTVRSLERDSNACTVARAGDNVAVTLHGVDGSLVMAGGVLCHPDFPVAVSKHLELKVLVLDGASPILVGAQLEFHIHHAKEPARVSRILSVLDPKTGKVIKKSPRCLTAKQSAVIEVTLQEPVCVVDFSSCKALGRVSLRSLGRTIAVGLVSRIIEE. 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06119 784 Gene3D - 34 72 - -
Seca11g06119 784 Pfam Elongation factor Tu C-terminal domain 676 781 IPR004160 -
Seca11g06119 784 PRINTS GTP-binding elongation factor signature 359 372 IPR000795 GO:0003924|GO:0005525
Seca11g06119 784 PRINTS GTP-binding elongation factor signature 418 426 IPR000795 GO:0003924|GO:0005525
Seca11g06119 784 PRINTS GTP-binding elongation factor signature 438 448 IPR000795 GO:0003924|GO:0005525
Seca11g06119 784 PRINTS GTP-binding elongation factor signature 499 508 IPR000795 GO:0003924|GO:0005525
Seca11g06119 784 PRINTS GTP-binding elongation factor signature 454 465 IPR000795 GO:0003924|GO:0005525
Seca11g06119 784 FunFam Elongation factor 1 alpha-like protein 348 579 - -
Seca11g06119 784 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 355 586 IPR000795 GO:0003924|GO:0005525
Seca11g06119 784 SUPERFAMILY Ran binding protein zinc finger-like 41 67 IPR036443 -
Seca11g06119 784 Gene3D - 346 579 IPR027417 -
Seca11g06119 784 Gene3D Translation factors 583 672 - -
Seca11g06119 784 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 678 782 IPR009001 -
Seca11g06119 784 ProSiteProfiles Zinc finger RanBP2 type profile. 40 69 IPR001876 -
Seca11g06119 784 FunFam elongation factor 1-alpha isoform X4 676 784 - -
Seca11g06119 784 SUPERFAMILY Translation proteins 577 672 IPR009000 -
Seca11g06119 784 MobiDBLite consensus disorder prediction 303 336 - -
Seca11g06119 784 Pfam Elongation factor Tu GTP binding domain 358 574 IPR000795 GO:0003924|GO:0005525
Seca11g06119 784 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 600 IPR027417 -
Seca11g06119 784 MobiDBLite consensus disorder prediction 247 336 - -
Seca11g06119 784 CDD HBS1_C_III 673 781 - -
Seca11g06119 784 ProSitePatterns Zinc finger RanBP2-type signature. 44 63 IPR001876 -
Seca11g06119 784 CDD EF1_alpha 359 578 - -
Seca11g06119 784 SMART zf_4 42 66 IPR001876 -
Seca11g06119 784 FunFam Translation elongation factor EF-1 582 672 - -
Seca11g06119 784 MobiDBLite consensus disorder prediction 247 295 - -
Seca11g06119 784 PANTHER TRANSLATION FACTOR 354 781 - -
Seca11g06119 784 Gene3D Translation factors 676 784 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06119 Seca-Chr11 161628545 161637091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06119 153 784 Eukaryotic Initiation Factors Gene Family AT5G10630 60.410 0.0 754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06119 K14416 - gmx:100801724 1261.9