Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06117 ATGCCAGGGAATAATTATAACTGCACTCCTTTGACACCAAGATCAAGATTGGAAAGGCTTTTGAGGGAAAGAGAGCTAAGGAAATCCTTCAGGTATTCTCAATCAAACGAGGAGGGAAGAGATGGCAACAAGGAAGGAGAACAGTTTTGCAGTGATTCTTGCATAAGTGAGAGTGAAAATTCAGGTTTTCATAATGAGGAAGAGGTCCCGGAAACGGTTGCGGATGCAAGTGTTTTTACAGAGAGAAGTCAAAGACAAGATGAGAGGCCACGCAAGCAACGGTTGTTGGTGGTAGCTAACAGGTTGCCTGTTTCAGCTGTTAGGGAGGGTGTGGACTCATATCACCTTGAGATCAGTGTTGGTGGCCTTGTCAGTGCACTTTTAGGTGTAAAGGAGTTTGACACAAGATGGATTGGGTGGGCTGGTGTGAATGTGCCTGATGAAGTTGGGCAGGAAGCATTAACAAAAGCTTTAGCTGAAATGCGATGCATCCCGGTATTTCTTGATGAGGGGATAGTTAATCAGTACTATAATGGTTATTGTAACAACATCTTATGGCCTCTATTTCATTACCTTGGGCTTCCACAAGAAGATCGACTTGCCACCACCCGGAGTTTCCAATCTCAATTTGATGCATATAAGAAGGCAAACCAAATGTTTGCTGATGTAGTAAATAAGCATTATGAGGAGGGAGATGTTGTTTGGTGCCACGATTACCACCTAATGTTCCTTCCAAAATGTTTGAAAGAGTACAATGACAAAATGAAAGTTGGCTGGTTTCTCCATACACCTTTTCCTTCCTCAGAAATACATAGGACTCTGCCATCCAGATCAGAGCTGTTGAGATCTGTACTTGCCGCTGACTTGGTGGGATTCCACACTTACGATTATGCAAGGCATTTTGTTAGTGCTTGTACCCGTATTCTTGGCCTTGAGGGTACACCTGAAGGAGTAGAAGATCATGGGAAGCTAACCCGTGTGGCTGCGTTTCCTATTGGGATTGATTCAGAAAGATTTACTCGAGCCCTTGAGCTCCCTGAAGTCCAGAATCACATGAAAGAACTGAAAGAAAGATTTGCAGGCCGAAAGGTAATGTTGGGTGTTGATCGTCTTGATATGATAAAAGGAATTCCCCAGAAAACCTTGGCATTTGAAAAGTTCCTCGAGGAGAATTCACATTGGCGTGATAAAGTTGTCTTGCTGCAAATTGCTGTACCTACAAGGACAGATGTTCCCGAATATCAAAAGCTTACAAGCCAGGTGCATGAGATTGTAGGACGCATCAATGGAAGATTTGGAACACTTACTGCTGTCCCAATACACCATCTGGATCGGTCACTTGACTTTCATGCATTATGTGCACTCTATGCTGTTACTGATGTAGCGCTTGTTACATCTTTAAGGGATGGAATGAATCTTGTCAGCTATGAATTTGTTGCATGTCAAGCTTCCAAGAAGGGGGTTCTCATTTTAAGTGAGTTTGCAGGTGCGGCACAGTCTCTTGGTGCAGGTGCTCTCTTGGTAAATCCATGGAACATCACAGAGGTAGCTGCTTCTATTGGTTATGCCTTGGATATGCCAGCTGATGAGAGAGAAAAACGGCATCAGTTTAATTTCAAGCACGTCACAACTCACACTTCACAAGAATGGGCTGCAACTTTTGTGAGTGAATTGAATGATACCATTGTTGAAGCCCAGCTTAGGACAAGACAAGTTCCTCCATTACTTCCTAACAAAGTGGCTGTTGATTGTTACTCAAAATCCAATAACCGATTAATTATACTGGGTTTCAATGCCACTTTGACTGAGCCAGTGGATGCCCTTGGAAGGGGTGGTCAAATTAGAGAACTGGAACTTAAATTACACCCAAATGTGAAGGAAGCTTTAAAGAAGTTATCTGACGATCCAAAGACAACAATAGTTGTTCTGAGTGGGAGTGATCGAGCTGTCTTGGACAAAAACTTCAGTGATTATAATATGTGGTTGGCAGCAGAAAATGGGATGTTTTTGCGGCTTACTTCAAGTGAATGGATGACAACCATGCCTGAAAATTTAAACATGGATTGGGTTGATAGCGTAAAGCATGTTTTTGAGTATTTTACTGAAAGAACCCCACGGTCTCATTTTGAGGTTCGGGAGACTTCAATTGTATGGAATTACAAATATGCAGATGTTGAGTTTGGAAGGATTCAAGCAAGAGATCTGCTTCAGCATCTTTGGACAGGACCAATATCAAATGCATCTCTTGATGTTGTCCAAGGTGGTCGATCTGTGGAGGTCCGGGCAGTTGGTGTATCAAAGGGAGCAGCTATTGATCGTATCCTGGGAGAGATAGTTCATAACAAAGGCATGAACGCACCGATTGATTACGTCCTATGCATTGGGCACTTTCTAACAAAGGTGGATGAAGATGTCTATAAATTTTTTGAGCCGGAGCTCCCTACTGAATCATCTCCAGTGCCAACAGCTATGCTATCCAAATCCAATTCATACAGGCCATCATCTCTGCCAAAATTTTCAGCCAGCAAAAGTGGGTCAAAAGCTTCTCGCTATAAACGCTCATTGTCAACAATTGAAAGGAGAGAAATTGATCGTGCAAGTGGTGATCCTTGGAGATCAACATATGGTGATAGAATATCATTACATGAGGGTTCTTCAGTGCTTGATCTTAAAGGTGATCATTACTTCTCTTGTGCTGTTGGGCGAAAGAGATCAAGTGCTCGCTACCTTCTTAAAACCTCAGATGATGTTGTCAATCTCTTAGGCGAGCTGGCGGAACATTCTTCATCACCATCAACTTAG 2802 0.4272 MPGNNYNCTPLTPRSRLERLLRERELRKSFRYSQSNEEGRDGNKEGEQFCSDSCISESENSGFHNEEEVPETVADASVFTERSQRQDERPRKQRLLVVANRLPVSAVREGVDSYHLEISVGGLVSALLGVKEFDTRWIGWAGVNVPDEVGQEALTKALAEMRCIPVFLDEGIVNQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFDAYKKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKEYNDKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDHGKLTRVAAFPIGIDSERFTRALELPEVQNHMKELKERFAGRKVMLGVDRLDMIKGIPQKTLAFEKFLEENSHWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGALLVNPWNITEVAASIGYALDMPADEREKRHQFNFKHVTTHTSQEWAATFVSELNDTIVEAQLRTRQVPPLLPNKVAVDCYSKSNNRLIILGFNATLTEPVDALGRGGQIRELELKLHPNVKEALKKLSDDPKTTIVVLSGSDRAVLDKNFSDYNMWLAAENGMFLRLTSSEWMTTMPENLNMDWVDSVKHVFEYFTERTPRSHFEVRETSIVWNYKYADVEFGRIQARDLLQHLWTGPISNASLDVVQGGRSVEVRAVGVSKGAAIDRILGEIVHNKGMNAPIDYVLCIGHFLTKVDEDVYKFFEPELPTESSPVPTAMLSKSNSYRPSSLPKFSASKSGSKASRYKRSLSTIERREIDRASGDPWRSTYGDRISLHEGSSVLDLKGDHYFSCAVGRKRSSARYLLKTSDDVVNLLGELAEHSSSPST. 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06117 933 Gene3D Glycogen Phosphorylase B; 341 543 - -
Seca11g06117 933 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 683 763 - -
Seca11g06117 933 Gene3D - 683 763 - -
Seca11g06117 933 MobiDBLite consensus disorder prediction 28 75 - -
Seca11g06117 933 MobiDBLite consensus disorder prediction 813 853 - -
Seca11g06117 933 Pfam Glycosyltransferase family 20 94 559 IPR001830 GO:0003824|GO:0005992
Seca11g06117 933 NCBIfam trehalose-phosphatase 622 807 IPR003337 GO:0003824|GO:0005992
Seca11g06117 933 Gene3D Glycogen Phosphorylase B; 85 340 - -
Seca11g06117 933 Gene3D - 619 807 IPR023214 -
Seca11g06117 933 FunFam Alpha,alpha-trehalose-phosphate synthase 617 687 - -
Seca11g06117 933 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 93 562 - -
Seca11g06117 933 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 341 543 - -
Seca11g06117 933 CDD HAD_TPP 592 812 - -
Seca11g06117 933 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 86 340 - -
Seca11g06117 933 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 82 926 IPR001830 GO:0003824|GO:0005992
Seca11g06117 933 SUPERFAMILY HAD-like 591 925 IPR036412 -
Seca11g06117 933 MobiDBLite consensus disorder prediction 819 852 - -
Seca11g06117 933 MobiDBLite consensus disorder prediction 28 47 - -
Seca11g06117 933 Pfam Trehalose-phosphatase 619 835 IPR003337 GO:0003824|GO:0005992
Seca11g06117 933 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 94 559 IPR012766 GO:0003825|GO:0005992
Seca11g06117 933 CDD GT20_TPS 94 559 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06117 Seca-Chr11 161597699 161606471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06117 1 931 Trehalose Biosynthesis Gene Families AT1G78580 74.132 0.0 1398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06117 K16055 - gmx:100816642 1626.68