Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06112 ATGAGTTTTCCAAACCAATCCATGTCATCAGCTTCTCCTCAGAGAAAGATGGGAAGGGGAAAGATTGAGATCAAGAGGATTGAGAACACAACCAATCGCCAAGTTACCTTCTGCAAACGTAGAAATGGGTTGCTCAAGAAAGCATATGAGTTGTCTGTGCTTTGTGATGCAGAAGTTGCTCTTGTAGTCTTCTCAAGCCGTGGCCGTCTCTATGAATATGCAAATAACAGGATCTTGCATATACATATCAGTGAAAGTTATAGAAAAAAGAAAAAGAAAAGGGTTTTCTTTTATTGCTATTTCAGTGTGAAAGCAACAATTGAGAGGTACAAGAAAGCATGTTCAGATCAATCGTCTAGTGGCGGATCCGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCTGCCAAACTGCGTGTGCAAATCAGTAACCTGCAGAATCACAACAGGCAAATGATGGGCGAGGCTTTGAGCAATATGAATGCCAAGGAACTCAAAAACCTTGAGACTAAATTAGAGAAAGGAATTAGCAGAATTCGTTCCAAGAAGAACGAGTTGTTATTTGCAGAAATTGAGTACATGCAGAAAAGGGAAATAGACTTGCATAATAACAACCAACTTCTTAGAGCAAAGATAGCAGAAAGTGAGAGGAACCACCATAACGTGAACGTGTTGGGTGGAGGCACAAACTTTGAATCTATGCAATCTCAGCAGCAGTTTGATTCTCGCGGCTACTTCCAAGTGAATGGATTACAGCCCAATAATCAGTATGCAAGACAAGACCAAATGTCCCTTCAATTTGTTTGA 810 0.4074 MSFPNQSMSSASPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNRILHIHISESYRKKKKKRVFFYCYFSVKATIERYKKACSDQSSSGGSASEANAQFYQQEAAKLRVQISNLQNHNRQMMGEALSNMNAKELKNLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERNHHNVNVLGGGTNFESMQSQQQFDSRGYFQVNGLQPNNQYARQDQMSLQFV. 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06112 269 MobiDBLite consensus disorder prediction 1 20 - -
Seca11g06112 269 Coils Coil 166 186 - -
Seca11g06112 269 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Seca11g06112 269 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Seca11g06112 269 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Seca11g06112 269 SUPERFAMILY SRF-like 17 90 IPR036879 GO:0003677|GO:0046983
Seca11g06112 269 CDD MADS_MEF2_like 18 112 IPR033896 GO:0000977|GO:0045944
Seca11g06112 269 Gene3D - 29 94 IPR036879 GO:0003677|GO:0046983
Seca11g06112 269 Pfam K-box region 126 213 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca11g06112 269 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Seca11g06112 269 PANTHER SERUM RESPONSE FACTOR HOMOLOG 17 227 - -
Seca11g06112 269 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Seca11g06112 269 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Seca11g06112 269 FunFam MADS-box transcription factor 21 29 94 - -
Seca11g06112 269 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Seca11g06112 269 Coils Coil 129 156 - -
Seca11g06112 269 ProSiteProfiles K-box domain profile. 129 219 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06112 Seca-Chr11 161523063 161530944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06112 7 269 MADS-box Gene Family AT3G58780 59.851 2.51e-101 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca11g06112 K-box 5.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06112 K09264 - gmx:732595 388.267