Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06103 ATGGTACAATTTTTGAATGAGATAGGCATGATATCATGTTTGCAACACCCTAATCTTGTGAAACTTCATGGATGTTGCATTGAAGGGGATCAATTAATATTGGTGTATGAGTACATGGAAAATAATAGCCTGGCCTATGCTTTATTTAGCTCAAAAAATCAGCATAATCTGGATTGGCCTACAAGGCTTAGGATCTGCATTGGCATAGCAAAAGGTCTTGCATTTCTTCATGAAGAATCAAGGCTCAAGATTGTTCATCTAGATATCAAAGCTAATAATGTGTTACTGGATGGGAATTTAAATCCTAAAATATCTGATTTTGGGTTGGCGAGGCTTGATGAAGAGGAGGAGACCCATATCAATCTGTTAATTTTGTTTTGCAGAGGATATATGGCACCGGAGTATGCATTATGGGGTTACCTGACTTACAAGGCTGATGTTTACAGTTTTGGAGTTCTGGTCTTGGAAATTGTTAGTGGGAAGAGCAATCACAATTACATGCCAAGTGATAATTGTTTGTCTTTTAGATTGCAGGCATGTCATCTGCAACGTACTGAAAACTTAATGAAACTGGTTGATGAAAGGTTAGGATCAGAAGTAAACCCAACTGAAGCAAATAATGTGCTGAAAGTAACCCTGTTGTGCACAAATGCAGCGCCATCACTTAGGCCTACAATGTCTGTGGTTGTAAACATGCTTGAAGGAAGAACAAACATTCCGGATGTTATCCCAGAACAAAGTGTTCTCAGTGAAGATTTAAGGTTTATAGCCATGAGGGACATCCATCAACAGAGGGAAAATCACAGTTTGAGCACAAGTCAAACAGACAATTCAACAGGAGTCCTTACACGTAGCTCTCCCTCAATATTTGGCAATGACATAAGTGAGATACCCTCAGAATCAGAATCATAA 912 0.3882 MVQFLNEIGMISCLQHPNLVKLHGCCIEGDQLILVYEYMENNSLAYALFSSKNQHNLDWPTRLRICIGIAKGLAFLHEESRLKIVHLDIKANNVLLDGNLNPKISDFGLARLDEEEETHINLLILFCRGYMAPEYALWGYLTYKADVYSFGVLVLEIVSGKSNHNYMPSDNCLSFRLQACHLQRTENLMKLVDERLGSEVNPTEANNVLKVTLLCTNAAPSLRPTMSVVVNMLEGRTNIPDVIPEQSVLSEDLRFIAMRDIHQQRENHSLSTSQTDNSTGVLTRSSPSIFGNDISEIPSESES. 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06103 303 MobiDBLite consensus disorder prediction 265 303 - -
Seca11g06103 303 ProSitePatterns Serine/Threonine protein kinases active-site signature. 84 96 IPR008271 GO:0004672|GO:0006468
Seca11g06103 303 ProSiteProfiles Protein kinase domain profile. 1 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06103 303 Gene3D Transferase(Phosphotransferase) domain 1 40 245 - -
Seca11g06103 303 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g29720 39 237 - -
Seca11g06103 303 Gene3D Phosphorylase Kinase; domain 1 1 39 - -
Seca11g06103 303 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 3 270 - -
Seca11g06103 303 SUPERFAMILY Protein kinase-like (PK-like) 3 236 IPR011009 -
Seca11g06103 303 SMART serkin_6 2 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06103 303 Pfam Protein tyrosine and serine/threonine kinase 3 233 IPR001245 GO:0004672|GO:0006468
Seca11g06103 303 MobiDBLite consensus disorder prediction 267 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06103 Seca-Chr11 161455053 161456583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06103 3 268 Receptor kinase-like Gene Family AT1G53440 58.889 3.69e-98 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca11g06103 PK_Tyr_Ser-Thr 1.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06103 - - lja:Lj4g3v2618570.1 474.167