Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06100 ATGCTCTCTAGAAGGACCTTCTTTGCGTTCTTAATCATTGCATTGAGTTGTTTCAGATGGCTGGAATTTGCAGAATCCAAACTACCCCAGGATGAGGTTAATGCCCTTAAAGAAATCACTAGTACGATGGGTGCCACCTATTGGAATTTTGATAGTGATTCTTGTCAAATTAAAATGGCGGGGTTGACACCAGAGCCACCTGATGGATCTAAAAGCAGCATCGATTGTGATTGCTCTTCTGAAAATGACACCTTCTGTCATGTAGTGAGGATTATGTTCAAGGGGTACAACCTTCCTGGCATGCTTCCACCTCAATTGGTTAAGCTTCCTTACCTCAGAGAAATTGATTTTTCTTTAAACTACCTAAATGGGACGATTCCAAAGGAATGGGCTTCAATGAAATTAACTTTTATCTCTCTATTTGTTAATCGTTTATCAGGAGAAATTCCTAAGGAGCTGGGAAATATTACCACTCTCACATACCTGAACCTTGAAGCGAACCAATTTTCTGGCCATGTTCCCTCTGAACTTGGAAATCTATTTAACCTGCAGACTTTGATTTTATCATCCAATAAGTTGCTTGGGAACTTACCAGTGACATTTGCTCAGTTACAGAATTTGACAGATTTTAGGATAAATGATAATAGTTTCGACGGAAAAATACCTAGCTTCATACAGAATTGGAAACAACTTCATAGACTAGAAATGCATGCAACTGGACTGGAGGGACCTATCCCATCAAATATTTCTCTTTTGACTAATTTATCTCAACTGAGGATTAGTGATGTAAATAGTCCAAGTCAGGATTTTCCTAATTTAAGCAACATGACAGGAATGACAAAATTGATTTTGAGAAATTGTAATATTTCTGGAGAGCTTCCTACCTACTTCTGGACTATGAAGACTTTGGAGATGTTGGATCTCAGTTTCAATAATTTGGTTGGGGAAATACCAGAAACTGCACATGTGGGGCATCTGAGATTCCTCTTCCTATCTGGCAACAAGCTAAGTGGTGATGTACCTGCCTCAATCTTGATGGATGGAAGCAATGTTGATCTTTCATACAACAACTTTACGTGGCAAGGACCTGAGAGACCTGCTTGTGGAGATCACCTGAATTTAAACCTAAACTTGTTCAGGAGCTCCTCAGGGATCAATGAATTACAGGGGATTCTTCCATGTTCAAAAACATTCAACTGTCCTAGATATTCAAGTTGTCTGCATGTTAATTGTGGTGGAAACAATATACAGGTGAGGGGAAATGATGAAAATATCCTCTATGTAGGAGATGGAGACGTGGTTGGTGGTGCTGCTAAATATTTTAATGATTATAATAATTACTGGGGCTTTAGTAGCACTGGGGACTTCATGGATGATGGTGATTACCAAAATTTACGTTACACCAGGTCTTTATCATCTTCAAGTTTGCCTGAAATATATACAACGGCTCGTGTCTCTCCGATTTTGCTTACTTATTTTCACTATTGCTTGGAAAATGGGAAATATACTGTAAATCTCCACTTTGCAGAAATAATATTTACAAATGATAACACATATAGAAGTCTTGGGAGGCGCTTATTTGATATCTATGTTCAGGAAAGGTTAGTTTGGAAGGATTTTAATATTGAAGGTGAAACACACGCTGCTCAAAAACCACGCATAATATCAATTCATAATGTCACTGTAACAGACAATATTCTGGAGATTCGATTCTATTGGGCTGGCAAGGGAACTACAAGGGTTCTTCCTGTTGGCAGTGTTTATGGTCCCCTCATATCAGCTTTCTCTATTGTTTCTGATTCTAAACCTTGTTCAGACCGAAATAGTGGAAGGCATAAAATAGTCATTGGAGTTGGATTTGGAGTTTCAGCTCTATGCCTAGTCCTCATTATAGTAGGAATCTTTTGGAGAAAAGGCTGCATGAAAGGAATAATTAGAAGAGAAAGAGGTACTGAAGGGCAAGATTTTCAGATGAGGACATTTACCTTAAAGCAAATTAGAGATGCCACAGATGACTTCAGTCCTGCTAACAAGATTGGGGAAGGTGGTTTTGGTCCTGTCTACAAGGGTCAATTATCTGATGGTACGTGGGCAGCAGTCAAACAACTCTCATCAAAGTCGCGGCAGGGAAACCGTGAATTTTTGAATGAGATAGGCATGATATCATGTTTGCAACACCCTAATCTTGTGAAACTTCATGGATGTTGCATTGAAGGGGATCAATTAATATTGGTGTATGAGTACATGGAAAATAATAGCCTGGCCTATGCTTTATTCAGCTCAAAAAATCAGCATAATCTGGATTGGCCTACAAGGCTTAAGATCTGCATTGGCATAGCAAAAGGTCTTGCATTTCTTCATGAAGAATCAAGGCTCAAGATTGTTCATCGAGATATCAAAGCTACTAATGTGTTACTGGATGGGAATTTAAATCCTAAAATATCTGATTTTGGGTTGGCTAGGCTTGATGAAGAGGAGAAGACCCATATCATCACCCGAGTGGCTGGTACAATAGGATATATGGCACCAGAGTATGCATTATGGGGTTACCTGACTTACAAGGCTGATGTTTACAGTTTTGGAGTTGTGGTCTTGGAAATTGTTAGTGGGAAGAGCAATCACAATTACATGCCAAGTGATAATTGTGTTTGTCTTTTAGATAGGGCATGTCATCTGCAACGTACTGAAAACTTAATGAAACTGGTTGATGAAAGGTTAGGATCAGAAGTAAACCCAACTGAAGCAAATAATGTGCTGAAAGTAGCCCTGTTGTGCACAAATGCAGCGCCATCACTTAGGCCTACAATGTCTGAGGTTGTAAACATGCTTGAAGGAAGAACAAACATTCCGGATGTTATCCCAGAACAAAGTGTTCTCAGTGAAGATTTAAGGTTTATAGCCATGAGGGACATCCATCAACAGAGGGAAAATCACAGTTTGAGCACAAGTCAAACAGACAATTCAACAGGAGTCCTTACACGTAGCTCTCCCTCAATATTTGGAAATGACATAAGTGAGATACCCTCAGAATCATAA 3036 0.392 MLSRRTFFAFLIIALSCFRWLEFAESKLPQDEVNALKEITSTMGATYWNFDSDSCQIKMAGLTPEPPDGSKSSIDCDCSSENDTFCHVVRIMFKGYNLPGMLPPQLVKLPYLREIDFSLNYLNGTIPKEWASMKLTFISLFVNRLSGEIPKELGNITTLTYLNLEANQFSGHVPSELGNLFNLQTLILSSNKLLGNLPVTFAQLQNLTDFRINDNSFDGKIPSFIQNWKQLHRLEMHATGLEGPIPSNISLLTNLSQLRISDVNSPSQDFPNLSNMTGMTKLILRNCNISGELPTYFWTMKTLEMLDLSFNNLVGEIPETAHVGHLRFLFLSGNKLSGDVPASILMDGSNVDLSYNNFTWQGPERPACGDHLNLNLNLFRSSSGINELQGILPCSKTFNCPRYSSCLHVNCGGNNIQVRGNDENILYVGDGDVVGGAAKYFNDYNNYWGFSSTGDFMDDGDYQNLRYTRSLSSSSLPEIYTTARVSPILLTYFHYCLENGKYTVNLHFAEIIFTNDNTYRSLGRRLFDIYVQERLVWKDFNIEGETHAAQKPRIISIHNVTVTDNILEIRFYWAGKGTTRVLPVGSVYGPLISAFSIVSDSKPCSDRNSGRHKIVIGVGFGVSALCLVLIIVGIFWRKGCMKGIIRRERGTEGQDFQMRTFTLKQIRDATDDFSPANKIGEGGFGPVYKGQLSDGTWAAVKQLSSKSRQGNREFLNEIGMISCLQHPNLVKLHGCCIEGDQLILVYEYMENNSLAYALFSSKNQHNLDWPTRLKICIGIAKGLAFLHEESRLKIVHRDIKATNVLLDGNLNPKISDFGLARLDEEEKTHIITRVAGTIGYMAPEYALWGYLTYKADVYSFGVVVLEIVSGKSNHNYMPSDNCVCLLDRACHLQRTENLMKLVDERLGSEVNPTEANNVLKVALLCTNAAPSLRPTMSEVVNMLEGRTNIPDVIPEQSVLSEDLRFIAMRDIHQQRENHSLSTSQTDNSTGVLTRSSPSIFGNDISEIPSES. 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06100 1011 SMART serkin_6 673 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06100 1011 FunFam Putative LRR receptor-like serine/threonine-protein kinase 749 955 - -
Seca11g06100 1011 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 979 - -
Seca11g06100 1011 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 197 - -
Seca11g06100 1011 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 643 748 - -
Seca11g06100 1011 Pfam Malectin domain 406 595 IPR021720 -
Seca11g06100 1011 Gene3D Ribonuclease Inhibitor 35 195 IPR032675 -
Seca11g06100 1011 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Seca11g06100 1011 ProSiteProfiles Protein kinase domain profile. 673 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06100 1011 MobiDBLite consensus disorder prediction 975 1011 - -
Seca11g06100 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 794 806 IPR008271 GO:0004672|GO:0006468
Seca11g06100 1011 SUPERFAMILY Protein kinase-like (PK-like) 656 946 IPR011009 -
Seca11g06100 1011 Pfam Protein tyrosine and serine/threonine kinase 677 943 IPR001245 GO:0004672|GO:0006468
Seca11g06100 1011 SUPERFAMILY L domain-like 74 342 - -
Seca11g06100 1011 Gene3D Ribonuclease Inhibitor 196 266 IPR032675 -
Seca11g06100 1011 Gene3D Ribonuclease Inhibitor 267 366 IPR032675 -
Seca11g06100 1011 CDD STKc_IRAK 679 945 - -
Seca11g06100 1011 MobiDBLite consensus disorder prediction 977 1011 - -
Seca11g06100 1011 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 600 - -
Seca11g06100 1011 Gene3D Phosphorylase Kinase; domain 1 643 748 - -
Seca11g06100 1011 Gene3D Transferase(Phosphotransferase) domain 1 749 954 - -
Seca11g06100 1011 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 198 264 - -
Seca11g06100 1011 Gene3D - 404 602 - -
Seca11g06100 1011 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 266 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06100 Seca-Chr11 161420099 161435914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06100 8 838 Receptor kinase-like Gene Family AT1G29750 61.899 0.0 1047
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca11g06100 PK_Tyr_Ser-Thr 2.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06100 - - mtr:11406167 1639.01