Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06097 ATGGCTAATAACTCAGCAAGAATTGAAACCAATGAAGTTGTTTTGAATGTAAATAAGGATGTCTCCAAAACACATGAAGGCTCAGACACCTATGTCCCTTTCTTGCAGAAGTTGGTAGCTGAGGTGGTGGGCACATATTTCTTGATATTTGCAGGGTGTGCTTCAGTGGTGGTGAACAAGGGCTACGACAATGTGGTGACACTTACTGGGATTTCAATTGTTTGGGGACTGGTTGTGATGGTTATGGTTTACTCTCTTGGTCATATCTCTGGTGCCCATTTCAATCCTGCTGTCACTATTGCTTTTGCCACCACCAGAAGGTTTCCATGGATTCAGGTACCAGCATACATAGCAGCTCAGCTGATTGGAGCCACACTTGCAAGTGGAACTCTGAAACTGATATTTAGTGGGAGCCATGACAAGTTTCCAGGAACACTTCCAGCTGGATCTAACATGCAAGCTTTTTGGGTTGAATTCATAATCACTTTTTACCTTATGTTTGTCATATCCGGGGTTGCTACTGATAACAGAGCGATTGGTGAATTGGCTGGTATTGCAATTGGGTCTACAATACTGCTGAATGTGCTGATTGCAGGGCCGGTGACAGGAGGATCAATGAACCCAGTGAGAAGCCTAGGACCTGCTCTTCTACACAGTGAATACAGAGGAATATGGATATACTTGGTGTCACCGGTTCTGGGGGCGGTGGCCGGAGCATGGGTCTATAACATTTTGTTTGTTTCCTTGTTTCTGTCTGTCATGGATGAGGATTCAGCAAGAAATGGAACCCATGAAGTAGCTTTAGATGTAAACAAGGATGTCTCAAAAACAAGTGAAGACTCAGGCATCTACGTCTCTGTTTCTTTCTTGCAGAAGTTGGTAGCTGAAGTGGTGGGCACATATTTCTTGATATTTGCTGGCTGTGCTTCAGTGGTGGTGAACAAGAACAATGATAATGTAGTGACACTTCCTGGGATTTCAATTGTTTGGGGACTGGTTGTGATGGTGCTTGTTTACTCTATTGGTCATATCTCTGGTGCCCATTTCAATCCTGCTGTAACCATTGCTTTTGCCACCACCAAGAGGTTTCCTTGGAAACAGGTACCAGCTTATGTGGCAGCTCAAGTCCTTGGATCCACACTTGCAAGTGGAACTCTGAGACTAATATTTAGTGGCAAGCATGACCAGTTTTCAGGAACACTCCCAGCTGGTTCTAACCTGCAAGCTTTTATTGGTGAGTTGGCTGGGATTGCCGTTGGGTCTACTGTACTGTTGAACGTGATGTTTGCAGGGCCCATCACAGGAGCATCAATGAACCCAGCAAGAAGCATAGGGCCTGCATTTGTACACCATGAATATAGAGGAATTTGGGTATATTTGGTGTCTCCAATTCTGGGTGCTGTGGCTGGTGCATGGGTCTATAACATCATTCGATACACAGATAGGCCTGTCCGTGAAATAACCCAAAGTGCCTCTTTCCTCAAAGGAGTAGGCCGGAGTGGTGGCTCCAGGTGA 1515 0.4528 MANNSARIETNEVVLNVNKDVSKTHEGSDTYVPFLQKLVAEVVGTYFLIFAGCASVVVNKGYDNVVTLTGISIVWGLVVMVMVYSLGHISGAHFNPAVTIAFATTRRFPWIQVPAYIAAQLIGATLASGTLKLIFSGSHDKFPGTLPAGSNMQAFWVEFIITFYLMFVISGVATDNRAIGELAGIAIGSTILLNVLIAGPVTGGSMNPVRSLGPALLHSEYRGIWIYLVSPVLGAVAGAWVYNILFVSLFLSVMDEDSARNGTHEVALDVNKDVSKTSEDSGIYVSVSFLQKLVAEVVGTYFLIFAGCASVVVNKNNDNVVTLPGISIVWGLVVMVLVYSIGHISGAHFNPAVTIAFATTKRFPWKQVPAYVAAQVLGSTLASGTLRLIFSGKHDQFSGTLPAGSNLQAFIGELAGIAVGSTVLLNVMFAGPITGASMNPARSIGPAFVHHEYRGIWVYLVSPILGAVAGAWVYNIIRYTDRPVREITQSASFLKGVGRSGGSR. 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06097 504 Gene3D Glycerol uptake facilitator protein. 416 489 IPR023271 -
Seca11g06097 504 Gene3D Glycerol uptake facilitator protein. 255 415 IPR023271 -
Seca11g06097 504 Gene3D Glycerol uptake facilitator protein. 2 254 IPR023271 -
Seca11g06097 504 SUPERFAMILY Aquaporin-like 285 488 IPR023271 -
Seca11g06097 504 CDD MIP 291 477 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g06097 504 ProSitePatterns MIP family signature. 93 101 IPR022357 -
Seca11g06097 504 Pfam Major intrinsic protein 286 413 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g06097 504 Pfam Major intrinsic protein 32 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g06097 504 SUPERFAMILY Aquaporin-like 31 248 IPR023271 -
Seca11g06097 504 PRINTS Major intrinsic protein family signature 225 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g06097 504 PRINTS Major intrinsic protein family signature 157 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g06097 504 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g06097 504 PRINTS Major intrinsic protein family signature 188 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g06097 504 PRINTS Major intrinsic protein family signature 75 99 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g06097 504 PRINTS Major intrinsic protein family signature 112 131 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g06097 504 NCBIfam MIP family channel protein 40 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g06097 504 CDD MIP 36 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g06097 504 ProSitePatterns MIP family signature. 348 356 IPR022357 -
Seca11g06097 504 PANTHER AQUAPORIN NIP2-1 22 245 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06097 Seca-Chr11 161390907 161398158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06097 287 500 Major Intrinsic Protein MIP AT5G37810 54.008 8.87e-85 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06097 K09874 - gmx:100794883 410.223