Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06092 ATGGATGAAGCACAGGGCAGTTCAAGTTCCTTGCCTCCTTTCCTGGCAAAGACTTATGAAATGGTGGATGATCCTTCCACGGATCCGATTGTTTCCTGGAGTGTCAATAACAGAAGTTTCATTGTATGGAATCCCCCAGATTTTGCAAGGGATTTGCTTCCTAGATTCTTTAAGCACAATAACTTCTCAAGTTTTATCAGGCAGCTCAACACATATGTAAGCAAATTTGATGGATTTAGGAAAGTTGACCCTGAACAATGGGAATTTGCCAATGATGATTTTGTAAGGGGGCAACCACATCTTATGAAGAATATCCATAGACGGAAGCCAGTTCATAGCCATTCTTTACAGAATCTTCAAGCACAAGCCCCTCTAGCTGAGTCAGAGAAGCAGAGTTTAAATGATGAAATTAAGAAGCTTAAGCATGATAAAGAACGACTCCTTGTGGAGTTACAGAGACATCAACATGAGTGGCAAACATATGAGATACAAATACATTGTTCAAAAGATCGGTTGGAGAAGTTGGAACAGAAGCAACAAAAGATGGTCTCTTCTGTTTCTCAAGCATTGCACAAACCTGTGCTTGCTATAAATCTCTTGCCACTGACAGAAACCATGGATAGAAAAAGGAGGTTGCCAAGAAGTGGCTACTTTAATGATGAAGCTAGCAATGAAGATGCTATTGAAACTTCACAGATGTTACCCAGAGAAAATGCAGAGGGTGCCTCTGTTTTGACATCAAACATGGAAAGATTGGACCAACTTGAGTCATCCATGGTATTTTGGGAGACTATTGCACAAGAAATTGGTGACATCTTCACTCATATTCACTCAAACATGGATTTTGATGAATCTACGAGTTGTGGTGATAGTCTGTCTATATCTTGTGCGCAACTAGATGTTGAAGTTCGGCCTAAGTCACCTGGAATTGACATGAACTCTGAGCCAGCTGCAGCTGCTGCTCCTGAGCCTGTTGCATCCAAAGAACAACCTGCAGGAACTGTCACTGCAGCAACTGGTGTTAATGATGTGTTCTGGGAACAATTCTTGACAGAGGATCCTGGTGCATCTGAAGCACAGGAAGTGCAGTCAGAGAGAAAGGATTATAATGGCAGAAAAAATGAAGGCAAACCTAGTGACCATGGCAGATTTTGGTGGAATATGCGGAATGCAAATAATCTTTCAGAACAAATGGGGCATGTTGGTCAAGTAGAGAAAACTTAG 1224 0.415 MDEAQGSSSSLPPFLAKTYEMVDDPSTDPIVSWSVNNRSFIVWNPPDFARDLLPRFFKHNNFSSFIRQLNTYVSKFDGFRKVDPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLQNLQAQAPLAESEKQSLNDEIKKLKHDKERLLVELQRHQHEWQTYEIQIHCSKDRLEKLEQKQQKMVSSVSQALHKPVLAINLLPLTETMDRKRRLPRSGYFNDEASNEDAIETSQMLPRENAEGASVLTSNMERLDQLESSMVFWETIAQEIGDIFTHIHSNMDFDESTSCGDSLSISCAQLDVEVRPKSPGIDMNSEPAAAAAPEPVASKEQPAGTVTAATGVNDVFWEQFLTEDPGASEAQEVQSERKDYNGRKNEGKPSDHGRFWWNMRNANNLSEQMGHVGQVEKT. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06092 407 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 305 IPR027725 -
Seca11g06092 407 FunFam Heat shock transcription factor 1 7 109 - -
Seca11g06092 407 SUPERFAMILY "Winged helix" DNA-binding domain 9 108 IPR036390 -
Seca11g06092 407 Pfam HSF-type DNA-binding 14 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca11g06092 407 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca11g06092 407 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca11g06092 407 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca11g06092 407 Gene3D - 6 109 IPR036388 -
Seca11g06092 407 MobiDBLite consensus disorder prediction 306 330 - -
Seca11g06092 407 SMART hsfneu3 10 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca11g06092 407 Coils Coil 116 157 - -
Seca11g06092 407 MobiDBLite consensus disorder prediction 352 384 - -
Seca11g06092 407 MobiDBLite consensus disorder prediction 359 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06092 Seca-Chr11 161346995 161348304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06092 7 407 HSF AT4G18880 51.699 2.77e-121 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca11g06092 HSF_DNA-bind 1.6e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06092 K09419 - gmx:100798004 690.263