Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06087 ATGGCTTCGGCTGCGATTTTCTCGTCGCTCCGGCGACGGAGGTCGCCGTCTCTGGAGGCGTTTCTGGCACCGGTGGAGCTGAACAACGCGGCGTTGGTCGAGACACTTGTGGCGGTTACCGGCGACCTTGTCCGGTGCTTCTCCGACCACCCCTTCTCCTTCCAACGCAGAAACTCGCGTTCACTCATCAGAAAAGTGGAGGTTCTGCAGTTACTGTTAGAGTGCTTAAGAGACTCGTCCTCCGGCGGTGGCGCCACTGCCACTCTTCCCCCGACGGTGGTGCTCTGCTTGAAGGAGCTTTACTTGCTTCTTTACCGTTCCAAGATTCTCCTCGATCACTGCGCTCAATCGAGTAAGCTATGGCTCTTACTTCAGAACCATTCTATTTCCGGTCACTTCAATGATTTGAACCGAGAAATTTCGACCCTTTTGGACGTTTTTCCTGTTAGGGGCATTAACCTAAACGACGACGTTAGGGAACAGGTTGAGTTGTTAAGGGAACAACTAAAAAAAGCTAAGTTGTTTATAGACAAGAACGATGATGCCCTTAGAACAAGGTTCTTTTGTTTACTTGATGAGTTTGAAAACGGGAGGGTTCCTGATTCTGAAGAATTGAGGTATTTTTTTGTTGGTGAGTTGCAAATTGTTGATGCCAGGAGTTGTAAGGAAGAAGTTGAAGCATTGGAGGAGGAGATTGTTAATCATGAAGGTGATGTTGAGCCAACGGTTCCTGTGCTTAATGGGATGGTGGCTATAACAAGGTATTGCAGGTTCTTGCTCTTTGGGTTTGAGGAAGATGAGGTTGTTTGTTTGGATAATGGGAAGAAGAGCAACAAGAAGAGATTGATTTCTCAAGAGATTGGGGAAACGTTTTTGACTGTTCCAAAGGACTTTTGCTGTCCTATATCATTGGATTTGATGGGTGATCCTGTGATAATTTCGACAGGGCAAACATATGATCGGAGGTCTATTTCAAGGTGGATGGAAGAAGGGCATTGTACTTGTCCGAAAACGGGGCAATTGCTTTCACACAACCGCATTGTTCCTAATCGTGCTCTTAGGAACTTGATCTTGCAGTGGTGTAATGCACATGGGGTAACCTATGATCCACCTGAGGTTGTTGATTCATCTGCTGAAATGTTTGTATCAGCTCGTCCCTCCAAAGCTTCTATTGAAGCTAACAGAGGGACTGCAACACTTCTCATTCAGCAGCTAGCTGATGGGACACAAGCTGCAAAGACTGTGGCTGCTAGGGAGATTCGGTTGCTAGCAAAAACTGGGAAAGAAAACCGTGCCTTCATTGCGGAAGCAGGGGCGATTCCTTACCTTAGGAACTTGCTTTTGTCTCCTAACACTGTTGCACAGGAGAATTCAGTAACTGCATTGCTCAACCTATCCATTTTTGAGGGAAATAAAAGTCGGATCATGGAGGAGGAAGGGTGTCTGGGATCAATAGTTGAGGTGTTGAGATTTGGGCACACAACGGAGGCAAGGGAAAATGCTGCTGCAACATTGTTCAGCCTTTCTGCTGTCCATGACTATAAGAAAAGAATTGCAGATAGTGTGGGAGCTATTGAAGCACTGGCAGAACTGTTACAAGAGGGGACTCCAAGAGGAAAAAAGGATGCTGTAACAGCATTATTTAATCTTTCCACTCACACAGAGAATTGTTTGAGAATGGTAGAAGCAGGGGCGATAACTGCTCTAGTTGAGGCTTTGGGGAATGAAGGAGCTGCTGAGGAAGCAGCTGGTGCCTTGGCCCTGATTGTTCGGCAGCCTATTGGGGCCAAAGCAGTGGTGAGGGAGGAAGCAACAGTGGCTGGATTGATAGGAATGATGCGTTGTGGAACACCAAGAGGGAAAGAGAATGCAGTTGCAGCATTGCTGGAGTTATGCCGGAGTGGTGGTGCGGCTGCAACTGAAAGGGTGGTTAGGGCGCCGGCTTTGGCTGGATTACTTCAGACCTTGCTTTTCACTGGGACAAAGCGGGCAAGAAGAAAAGCAGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAGAATGCATCTCTACATTATGGTGGATTAGGTGTAGGGTATACATTTGCTAGCAATTCAGCTCCGACTAGGGATACAACCTTTGCTGGTGATGTTTCAGTTCCAATGTCCATTTCTGTCCCTGTTTTATAG 2166 0.47 MASAAIFSSLRRRRSPSLEAFLAPVELNNAALVETLVAVTGDLVRCFSDHPFSFQRRNSRSLIRKVEVLQLLLECLRDSSSGGGATATLPPTVVLCLKELYLLLYRSKILLDHCAQSSKLWLLLQNHSISGHFNDLNREISTLLDVFPVRGINLNDDVREQVELLREQLKKAKLFIDKNDDALRTRFFCLLDEFENGRVPDSEELRYFFVGELQIVDARSCKEEVEALEEEIVNHEGDVEPTVPVLNGMVAITRYCRFLLFGFEEDEVVCLDNGKKSNKKRLISQEIGETFLTVPKDFCCPISLDLMGDPVIISTGQTYDRRSISRWMEEGHCTCPKTGQLLSHNRIVPNRALRNLILQWCNAHGVTYDPPEVVDSSAEMFVSARPSKASIEANRGTATLLIQQLADGTQAAKTVAAREIRLLAKTGKENRAFIAEAGAIPYLRNLLLSPNTVAQENSVTALLNLSIFEGNKSRIMEEEGCLGSIVEVLRFGHTTEARENAAATLFSLSAVHDYKKRIADSVGAIEALAELLQEGTPRGKKDAVTALFNLSTHTENCLRMVEAGAITALVEALGNEGAAEEAAGALALIVRQPIGAKAVVREEATVAGLIGMMRCGTPRGKENAVAALLELCRSGGAAATERVVRAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYTFASNSAPTRDTTFAGDVSVPMSISVPVL. 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06087 721 SUPERFAMILY RING/U-box 282 368 - -
Seca11g06087 721 CDD RING-Ubox_PUB 295 344 IPR045210 -
Seca11g06087 721 Gene3D - 397 518 IPR011989 -
Seca11g06087 721 Coils Coil 218 238 - -
Seca11g06087 721 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 438 480 IPR000225 GO:0005515
Seca11g06087 721 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 523 565 IPR000225 GO:0005515
Seca11g06087 721 Gene3D - 53 150 IPR036537 GO:0007166
Seca11g06087 721 Pfam Armadillo/beta-catenin-like repeat 428 466 IPR000225 GO:0005515
Seca11g06087 721 SUPERFAMILY ARM repeat 395 675 IPR016024 -
Seca11g06087 721 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 369 IPR013083 -
Seca11g06087 721 SMART Ubox_2 297 360 IPR003613 GO:0004842|GO:0016567
Seca11g06087 721 Coils Coil 155 175 - -
Seca11g06087 721 Gene3D - 519 677 IPR011989 -
Seca11g06087 721 FunFam RING-type E3 ubiquitin transferase 370 693 - -
Seca11g06087 721 SMART arm_5 468 510 IPR000225 GO:0005515
Seca11g06087 721 SMART arm_5 512 552 IPR000225 GO:0005515
Seca11g06087 721 SMART arm_5 427 467 IPR000225 GO:0005515
Seca11g06087 721 SMART arm_5 592 633 IPR000225 GO:0005515
Seca11g06087 721 SMART arm_5 553 591 IPR000225 GO:0005515
Seca11g06087 721 ProSiteProfiles U-box domain profile. 293 367 IPR003613 GO:0004842|GO:0016567
Seca11g06087 721 Pfam U-box domain 294 364 IPR003613 GO:0004842|GO:0016567
Seca11g06087 721 PANTHER U BOX DOMAIN-CONTAINING 57 678 - -
Seca11g06087 721 FunFam RING-type E3 ubiquitin transferase 293 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06087 Seca-Chr11 161318731 161320896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06087 1 721 U-box Gene Family AT1G29340 67.847 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06087 - - gmx:100797462 1114.37