Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06061 ATGGATCAGTCAAGAAGCAAAGGCAGTGGTGAGATACTGGATCGTGTTGATGAAGGGGTGGATGCGAATTTGAGCCATTTGGTTGAAAAGGTTGCAATTGATGCCGGAGCTGGACGTAGCTTGGGTGACAGAGTTAGTGTGAGTGGGGAAGATGGGACTTCAGAAGAGATGGGCAATGGTCTCGGATTGAATAAGGAGCTAAAGGAGGGGCTTGAAGAATTTAAGGATCAGGACATGGGTGATTCACAAAAAATCAATGATACATTGCACGGTGTTGATCAAGGAACTAGCTATAATTCAAGTAATGATAATGGGGCAGTACTTGAGACCCGTGTTGTAATAGATTCTTCTGCTCAGATTGAGCATGTTAATGGAGATAATAGGAAATTGGAAGCAAAAGCTAATCAATCAGGGTTGAGCAAGTTAACCATTAAGGCACCAAAAGGGGTGTCTGAGACAGATAAAAATTCATGTGTGATTGATATAAACTGTGGCAGCTGCAAAGGGTTTAGTGAGAATTTGGAAGGTGAAAGGATTTGTAGGATCTGCCATCTGGCCTCTGGGCAACCATTAGAAGCAACTGGTGTTGGCATTCCAAATAGTGCTACTAATAGTACAACTTTGATTATGCTTGGTTGTGCATGTAAAGATGAGCTAGGCATTGCACACAGTCATTGCGCTGAGGCATGGTTCAAGATTAAAGGAAACAGGTTGTGTGAAATATGTGGTGAGACTGCAAAAAATGTTGCAGATGTTACTGATAATGGATTTATGGAAGAGTGGAATGAAAGTAGATTCATCGACGGTGAAGATACCTCAACCCGGAGGTTTGGTGGATGCTGGCGTGGGCAGCCATTTTGTAACTTCTTGATGGCATGCCTGGTAATCGCCTTTGTTCTTCCATGGTTCTTTCGTGTAAATATGTTCTAG 930 0.4269 MDQSRSKGSGEILDRVDEGVDANLSHLVEKVAIDAGAGRSLGDRVSVSGEDGTSEEMGNGLGLNKELKEGLEEFKDQDMGDSQKINDTLHGVDQGTSYNSSNDNGAVLETRVVIDSSAQIEHVNGDNRKLEAKANQSGLSKLTIKAPKGVSETDKNSCVIDINCGSCKGFSENLEGERICRICHLASGQPLEATGVGIPNSATNSTTLIMLGCACKDELGIAHSHCAEAWFKIKGNRLCEICGETAKNVADVTDNGFMEEWNESRFIDGEDTSTRRFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF. 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06061 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 254 IPR013083 -
Seca11g06061 309 SMART ringv_2 179 243 IPR011016 GO:0008270
Seca11g06061 309 Pfam RING-variant domain 205 242 IPR011016 GO:0008270
Seca11g06061 309 SUPERFAMILY RING/U-box 177 245 - -
Seca11g06061 309 ProSiteProfiles Zinc finger RING-CH-type profile. 172 249 IPR011016 GO:0008270
Seca11g06061 309 MobiDBLite consensus disorder prediction 42 61 - -
Seca11g06061 309 PANTHER ZINC FINGER, RING-CH-TYPE 82 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06061 Seca-Chr11 161003072 161006981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06061 160 308 C3H Transcription Factor Family AT5G05830 39.623 5.82e-29 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06061 - - gmx:100791129 481.1