LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g06060	ATGTCTGCTTCTGCTATTAATGGGAATGATTCCCTCACTGGTCACATCATATCCACTACAATTGGAGGAAAAAATGGGGAGCCAAAACAGACTATAAGTTACATGGCAGAACGCGTTGTGGGGACTGGGTCATTTGGAGTTGTTTTCCAGGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCTATTAAGAAGGTTTTACAGGATAGAAGATATAAAAATCGTGAGCTACAGTTAATGCGTATGATGGATCATCCAAATGTGATCTCTCTAAAGCATTGTTTCTTTTCTACTACAAGTACAGATGAGCTTTTTCTTAATTTGGTGATGGAATATGTTCCGGAGTCTATGTATCGAGTCTTGAAGTTCTATAGTAATTCTAATCAAAGAATGCCACTTATCTACGTAAAACTTTATATGTACCAGATTTTCAGGGGCCTGGCTTATATCCACACCGTACCTGGAGTATGCCACAGAGATTTGAAGCCTCAAAATATACTGGTTGACCCTCTTACACACCAGGTTAAGATATGTGATTTCGGAAGTGCAAAGGTTCTGGTCAAAGGTGAAGCTAATATATCATATATATGTTCGCGCTTCTATCGGGCTCCAGAACTTATATTTGGTGCCACTGAGTATACCACTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTGCTTTTGGGCCAGCCATTGTTTCCTGGCGAAAATGCTGTGGACCAGCTTGTAGAGATTATCAAGGTTCTTGGCACACCCACTCGGGAGGAAGTCCGCTGCATGAATCCAAACTACAATGACTTCAGATTTCCACAGGTTAAAGCACACCCATGGCACAAGATATTCCACAAAAAAATGCCTCCAGAAGCAATTGATCTAGCTTCCCGGCTTCTGCAGTACTCCCCAAGTCTCCGATGTACTGCGCTAGAAGCATGTGCACACCCATTCTTTGATGAACTCCGTGAACCCAATGCTCGCTTGCCAAATGGTCGTCCATTTCCACCTCTATTCAACTTTAAACAAGATTTATCTGGAGCATCTCCAGAGCTTGTTAACAGGTTGATACCTGACCACATGAAGCGGCAGATTGGGTTACAAAATGCCCATTTGGCAGGAACATGA	1125	0.4293	MSASAINGNDSLTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGVVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRMMDHPNVISLKHCFFSTTSTDELFLNLVMEYVPESMYRVLKFYSNSNQRMPLIYVKLYMYQIFRGLAYIHTVPGVCHRDLKPQNILVDPLTHQVKICDFGSAKVLVKGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEVRCMNPNYNDFRFPQVKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPFPPLFNFKQDLSGASPELVNRLIPDHMKRQIGLQNAHLAGT.	375

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca11g06060	374	Gene3D	Phosphorylase Kinase; domain 1	19	113	-	-
Seca11g06060	374	CDD	STKc_GSK3	29	321	IPR039192	-
Seca11g06060	374	Gene3D	Transferase(Phosphotransferase) domain 1	114	361	-	-
Seca11g06060	374	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	3	363	-	-
Seca11g06060	374	ProSiteProfiles	Protein kinase domain profile.	34	318	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Seca11g06060	374	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	155	167	IPR008271	GO:0004672\|GO:0006468
Seca11g06060	374	SUPERFAMILY	Protein kinase-like (PK-like)	33	343	IPR011009	-
Seca11g06060	374	Pfam	Protein kinase domain	34	318	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Seca11g06060	374	FunFam	Shaggy-related protein kinase kappa	114	361	-	-
Seca11g06060	374	SMART	serkin_6	34	318	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g06060	Seca-Chr11	160979764	160984064	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g06060	38	356	MAP Kinase Gene Family	AT3G59790	35.928	1.50e-59	196

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Seca11g06060		Pkinase	1.7e-65	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g06060	K14502		-	gmx:100779909	734.176

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