Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06058 ATGAAACCCTTTTGCAGATTCTTGATTCTTCTAGCGCTGTTTTCTCTCGCAGAATCCTCATGCAACAGTGGAGACCAGGCCTTGGTGTCAAAGGCTTTCAAATCCGTCTCTGGCTTCAAAGCTTCCACCTTGTTCCAAACAAGAGGTTCTAACTGTTCAGAGCCTCACATCATCAGCAAAATAGTCCTTCCATCCAAAAATCTAAGTGGGACAATTTCATGGGGTTATCTTAGGAACATGTCCAACTTACAGGTTCTTGATCTCTCTGGAAATTCCCTGGTAGGCCATGTGCCAAGCTGGTTATGGTCAAGTTCATCCTTATTAGAAATAAATCTCTCAAATAACAGGTTTGGAGGGAGCATTCTTATATCAGAAAACACCTCGTTTTCATCCATTCAAATGCTCAATCTCTCCCACAACAGGTTTACCAATTCAGTTCAACTCTCTGGCTTCCCAAACCTAAAAAGCCTCGACCTTTCTCACAACAAACTAGGAACACTCCCTTCCGGGTTCCAAAACCTCACCAAACTACAACACCTTGACCTCTCAAGCTGCAATCTCAAAGGGAACATAAAACCCATTTCTTCCTTACACTCACTTCACTACTTAGACTTATCAAACAACACCTTAACCGGTACTTTCCCTTCTGATTTCCCTCCCCTGAACATCCTCCAATTCTTGAACATCTCATACAATAACTTCAACTCATCAATCAGCTTAAACAAGTTGAATCAATTCAGCATATCATCTTTCATCCACGCTGGCAACAACTTCACCTACAACGACAAAACCAAAACCCCACCAACACCACCATTCCAACCCCACGTAGGAAAACAAGCAATTCATCAAAAACAATCCAAGACACTAATCCCTGCAGTGTGTTCTGCAATATCAGGACTTGTCCTTGTTCTTCTGTCCATTTGGGTACTCCGCATTATTCACAAGAAGAGAAAGCAACGATCCAAGAGGAGCAAATGGGCAATCTCCTTGCCTGTCCCACAGGGGATGAACATGATGACAACAAAGTTTGAGAAATCAGGGCCGTTCGCTTTTGAGACTGAATCAGGGTCAACGTGGGTGGCTGACCTGAAGGAACCATCTTCTGCATCAGTGGTGATGTTCGAGAAGCCATTGATGAATCTCACCTTCAAGGACCTCATCGTTGCCACGTCACACTTCGGCAAGGACTCTCTGCTCGCAGAGGGAAGGTGTGGACCAGTGTACAGGGCTGTGCTACCAGGGGACCTCCACGTGGCAATCAAGGTCCTGGAACATGCCAGAGACGTTGATCGTGATGACTCTGTCACTATGTTCGTTGACCTCTCAAAACTTAAGCACCCCAACTTGTTGCCCCTCTCCGGTTACTGCATTGCAGGTAAGGAGAAGCTGGTGCTGTACGAGTATATGGCAAACGGCGATTTAGGAAGGTGGCTACACGAGCTTCCAGCAGGGGACACCAACGTGGAGGATTGGACTGGCGACACGTGGGAGATCCAAAACGGCGTCGTTGACGGATCCCCTGAAAAGATGGGGTGGCTGACACGACACCGTATCGCGGTGGGTATAGCGCGTGGGCTCGCGTATCTCCACCACGCGGGTTCCAAACCCGTCGTGCACGGCCACCTCGTAACCTCCAACATTTTACTCGCCGACGATTTCGAGCCTCGGATCGCTGATTTCGGGTTGCGAATCGACCCGAGCCCAAATGGAGGAACCGAAGCTGACGTGTACTGTTTCGGGGTGGTTCTCATGGAGCTGCTGACGGGGAGGGCTGGCACGGCGGAGACGGTCGTTGCGGTTAGAAAAGCGGTGAGGGAGGGGCAAGGCGTTAGGGTGCTGGACGAGAGGCTGCAACTCGGTGGTGACTCGGTGGTGAGTCAGATGGTTGAAAGCCTCCGAGTCGCTTTCCTGTGCACTGCCGAGTCATCTTCCAAAAGGCCCACAATGCGTCAGGTTTTGGGTTTGCTCAAAGACATTCGTCCTCATCAACGACTCGTCCCGAGTTGA 2007 0.4923 MKPFCRFLILLALFSLAESSCNSGDQALVSKAFKSVSGFKASTLFQTRGSNCSEPHIISKIVLPSKNLSGTISWGYLRNMSNLQVLDLSGNSLVGHVPSWLWSSSSLLEINLSNNRFGGSILISENTSFSSIQMLNLSHNRFTNSVQLSGFPNLKSLDLSHNKLGTLPSGFQNLTKLQHLDLSSCNLKGNIKPISSLHSLHYLDLSNNTLTGTFPSDFPPLNILQFLNISYNNFNSSISLNKLNQFSISSFIHAGNNFTYNDKTKTPPTPPFQPHVGKQAIHQKQSKTLIPAVCSAISGLVLVLLSIWVLRIIHKKRKQRSKRSKWAISLPVPQGMNMMTTKFEKSGPFAFETESGSTWVADLKEPSSASVVMFEKPLMNLTFKDLIVATSHFGKDSLLAEGRCGPVYRAVLPGDLHVAIKVLEHARDVDRDDSVTMFVDLSKLKHPNLLPLSGYCIAGKEKLVLYEYMANGDLGRWLHELPAGDTNVEDWTGDTWEIQNGVVDGSPEKMGWLTRHRIAVGIARGLAYLHHAGSKPVVHGHLVTSNILLADDFEPRIADFGLRIDPSPNGGTEADVYCFGVVLMELLTGRAGTAETVVAVRKAVREGQGVRVLDERLQLGGDSVVSQMVESLRVAFLCTAESSSKRPTMRQVLGLLKDIRPHQRLVPS. 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06058 668 Pfam Leucine rich repeat 131 187 IPR001611 GO:0005515
Seca11g06058 668 Pfam Leucine rich repeat 67 117 IPR001611 GO:0005515
Seca11g06058 668 Pfam Protein tyrosine and serine/threonine kinase 397 564 IPR001245 GO:0004672|GO:0006468
Seca11g06058 668 Gene3D Ribonuclease Inhibitor 25 125 IPR032675 -
Seca11g06058 668 Gene3D Transferase(Phosphotransferase) domain 1 469 569 - -
Seca11g06058 668 Gene3D Ribonuclease Inhibitor 126 248 IPR032675 -
Seca11g06058 668 ProSiteProfiles Leucine-rich repeat profile. 153 175 IPR001611 GO:0005515
Seca11g06058 668 FunFam Putative LRR receptor-like serine/threonine-protein kinase 354 468 - -
Seca11g06058 668 SUPERFAMILY L domain-like 54 260 - -
Seca11g06058 668 PRINTS Leucine-rich repeat signature 154 167 - -
Seca11g06058 668 PRINTS Leucine-rich repeat signature 197 210 - -
Seca11g06058 668 SMART LRR_typ_2 151 173 IPR003591 -
Seca11g06058 668 SMART LRR_typ_2 197 220 IPR003591 -
Seca11g06058 668 SMART LRR_typ_2 80 104 IPR003591 -
Seca11g06058 668 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 572 660 - -
Seca11g06058 668 FunFam Calmodulin-binding receptor kinase CaMRLK 130 240 - -
Seca11g06058 668 ProSiteProfiles Protein kinase domain profile. 393 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06058 668 Gene3D Transferase(Phosphotransferase) domain 1 570 665 - -
Seca11g06058 668 Gene3D Phosphorylase Kinase; domain 1 353 468 - -
Seca11g06058 668 SUPERFAMILY Protein kinase-like (PK-like) 370 660 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06058 Seca-Chr11 160943662 160946905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06058 54 659 Receptor kinase-like Gene Family AT5G07280 31.988 6.60e-74 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Seca11g06058 PK_Tyr_Ser-Thr 3.1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06058 - - gmx:100788556 981.089