Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06055 ATGTCAGAAGAATATAATGAGAGTAGTACTCATGAGAATGAGAGGGAAGTGCAGGCTGATGATAGTTCAATGGGATCTTCCCAGAAGTGTTCATCCTTTGACTTGAATGAAGAAGCTGCTAGTAGTGAAGATAACAATGACAATGAAGAGGCATGTGATGAACTCATAGGTGATCATGAGGAGGGATTTGAGAAAGGGAATATTGAGGACGAAGGTACTTCAAAGAACACAACAAGCAGAGACCAAGGAAATGAAAGAAGAGGTGGTGTGAGACAATATGTTAGATCAAAGATGCCAAGGCTTAGGTGGACTCCTGACCTTCATCACTCCTTTGTTCATGCTGTTGAAAGGCTTGGTGGTCAAGAGAGAGCAACACCCAAGTTGGTGCTTCAGGTAATGAATGTGAGAGGACTCAGCATTGCTCATGTCAAGAGTCACTTGCAGTTCATAGTTATGCAATTTTCATTTCAGATGTACCGAAGCAAGAAGCTTGACGAGGCTGGGCAAGTACTAAGTCGAACATACAGATCAACCCATGAACTAGGTCGTATTTCTCATGGAGCCCACCAATATCAGTCCATGAATCCTCATCAACATTTCAAGATGGGAAATGGTGGAATTATTCTAACAAGTAACTACAACGACCATGGTTATTTCCAGGGTCTCATGCATCCTTCCTCATTATCACATTCACATTCAAAGGCCATTGATTCAAGGCATCAACAATTGTACTCTAATCATCAACCTTCTAGAAGACCAAGTTACTTGAGCAATGAAGTTGTCCCCTCAACTTCAAACCAAATTCAACTGATGGATGCTAGCAGACTTGCACCCATGAGACCAAGCCAGTTTATTGAAGAGAAAAGGTGGCCTCCATTAGAAACAATGAACAATCACCATTGGAAGAAAAACTACTCAACACAATTTGGCAGACCAGCTGAGGTGATCAGCTTTGGAAACAACACAAGAATCAGGGAACATCTATCAAACTCAGATGAGCATTCCAACAATTTAAAGCTAGATTTTGATCCTCCATTCCGGATTAAGTTGAATCGAGAAAATTTGGAGACAGACAAGCAAATGGTGCCTGATTTGCAACTGAGTCTAAGTCAGAAAAATGGCAATAACAAGGATGACAAGAGTGATAATTGCAGAGAAACCCAAGAAATCAACACAAAACTTTCACTCTCTTAG 1194 0.4095 MSEEYNESSTHENEREVQADDSSMGSSQKCSSFDLNEEAASSEDNNDNEEACDELIGDHEEGFEKGNIEDEGTSKNTTSRDQGNERRGGVRQYVRSKMPRLRWTPDLHHSFVHAVERLGGQERATPKLVLQVMNVRGLSIAHVKSHLQFIVMQFSFQMYRSKKLDEAGQVLSRTYRSTHELGRISHGAHQYQSMNPHQHFKMGNGGIILTSNYNDHGYFQGLMHPSSLSHSHSKAIDSRHQQLYSNHQPSRRPSYLSNEVVPSTSNQIQLMDASRLAPMRPSQFIEEKRWPPLETMNNHHWKKNYSTQFGRPAEVISFGNNTRIREHLSNSDEHSNNLKLDFDPPFRIKLNRENLETDKQMVPDLQLSLSQKNGNNKDDKSDNCRETQEINTKLSLS. 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06055 397 MobiDBLite consensus disorder prediction 229 263 - -
Seca11g06055 397 MobiDBLite consensus disorder prediction 58 92 - -
Seca11g06055 397 Pfam Myb-like DNA-binding domain 101 148 IPR001005 -
Seca11g06055 397 MobiDBLite consensus disorder prediction 368 397 - -
Seca11g06055 397 MobiDBLite consensus disorder prediction 40 57 - -
Seca11g06055 397 NCBIfam myb-like DNA-binding domain, SHAQKYF class 99 149 IPR006447 GO:0003677
Seca11g06055 397 SUPERFAMILY Homeodomain-like 97 150 IPR009057 -
Seca11g06055 397 MobiDBLite consensus disorder prediction 20 39 - -
Seca11g06055 397 MobiDBLite consensus disorder prediction 1 92 - -
Seca11g06055 397 Gene3D - 98 164 - -
Seca11g06055 397 MobiDBLite consensus disorder prediction 1 19 - -
Seca11g06055 397 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 74 240 IPR046955 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06055 Seca-Chr11 160905440 160910314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06055 90 169 G2-like Transcription Factor Family AT2G42660 68.750 1.68e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca11g06055 Myb_DNA-binding 2.1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06055 - - gmx:100808625 500.745