LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g06053	ATGGCTGAGGTGGCTCCCAAGAAGAGCAACACCGAAGCCTCCACCTCCAACTCCAACTCCATTAACAAGAAGGTAAACACAAATCTTCTATTGGGTAGGTTCGAGCTAGGGAAGCTCCTTGGCCATGGAACCTTCGCGAAGGTCCACCATGCCCGGAACATCAAAACCGGTGAAGGGGTAGCCATAAAGATCATAAACAAAGAAAAGATCCTAAAGACTGGTTTGGTGTCCCACATCAAACGCGAGATCTCCATCCTCCGCCGTGTCCGCCACCCAAACATTGTCCAACTCTTCGAAGTCATGGCCACAAAGACCAAGATCTACTTCGTCATGGAGTATGTTCGTGGTGGTGAGCTCTTCAACAAGGTTGCAAAAGGTAGGTTGAAGGAAGAAGTTGCAAGGAAATACTTTCAGCAATTGATTTGTGCTGTGGAGTTTTGTCATGCCAGAGGTGTGTTCCATAGGGATCTAAAGCCTGAAAATTTGTTGCTTGATGAGAATGGTAACCTTAAAGTTTCTGACTTTGGACTCAGTGCTGTGTCTGATCAAATTAGGCAAGATGGGTTGTTCCACACATTTTGTGGGACACCTGCTTATGTTGCTCCTGAGGTTTTGGCTAGGAAAGGGTATGATGGTGCTAAGGTTGATATTTGGTCTTGTGGGGTTGTTTTGTTTGTTTTGATGGCTGGTTATTTGCCTTTTCATGATAGAAATATTATGGCTATGTATAAGAAGATTTACAAGGGTGAGTTTAGGTGTCCAAGGTGGTTCTCCCCTGAACTTTCTAGGCTTCTCACTAGGCTTCTTGATACCAATCCTCAAACCAGGATTTCCATTCCAGAGATCATGGAGAATAGGTGGTTTAAGCAGGATTTCAAGCAGATAAAATTCTATGTTGAGGATGATAAGGTGCATCATGATGATTATGATGATGATGATGTGGTATTGGCATCAGAATTATCTGACTCCGAGGTTGAGACTAGAAGGAGGAATAATCACAATAATGCTTCATTGCCTAGACCTGCAAGTTTGAATGCATTTGACATCATATCATTTTCTCAGGGTTTTGATCTTTCTGGATTGTTTGAGGAAAAGGGTGATGAGGCAAGGTTTGTGACTGGTGCCTCAGTGTCTAAGATTATATCAAAATTGGAGGAAATTGCTCAGTTGGTTAGCTTTAGTGTGAGGAAGAAAGATTGCAGGGTCAGCTTGGAGGGTTCTAGAGAAGGGGTAAAAGGGCCATTGACAATTGCTGCAGAGATATTTGAATTGACACCTTCTTTGGTAGTGGTGGAGGTGAAGAAAAAAGGAGGGGATAAAGCAGAGTATGAGAAGTTTTGTAACTCTGAATTGAAACCTGCTTTGGAGAGTTTGATGATGGAGGAATCTGCAACTTCTTCATGCCAAACTACACCTGCTGAACCTTCTCAACAACGTTCACTCTCTGACTCTGCCCTCAATATACCTTCAGATACTGAACCTTTGCACTTAGATACCTAA	1500	0.43	MAEVAPKKSNTEASTSNSNSINKKVNTNLLLGRFELGKLLGHGTFAKVHHARNIKTGEGVAIKIINKEKILKTGLVSHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLICAVEFCHARGVFHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDIWSCGVVLFVLMAGYLPFHDRNIMAMYKKIYKGEFRCPRWFSPELSRLLTRLLDTNPQTRISIPEIMENRWFKQDFKQIKFYVEDDKVHHDDYDDDDVVLASELSDSEVETRRRNNHNNASLPRPASLNAFDIISFSQGFDLSGLFEEKGDEARFVTGASVSKIISKLEEIAQLVSFSVRKKDCRVSLEGSREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDKAEYEKFCNSELKPALESLMMEESATSSCQTTPAEPSQQRSLSDSALNIPSDTEPLHLDT.	500

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g06053	499	Pfam	Protein kinase domain	35	288	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g06053	499	MobiDBLite	consensus disorder prediction	1	20	-	-
	Seca11g06053	499	CDD	CIPK_C	345	455	-	-
	Seca11g06053	499	CDD	STKc_SnRK3	33	287	-	-
	Seca11g06053	499	FunFam	Non-specific serine/threonine protein kinase	25	113	-	-
	Seca11g06053	499	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	152	164	IPR008271	GO:0004672\|GO:0006468
	Seca11g06053	499	MobiDBLite	consensus disorder prediction	460	489	-	-
	Seca11g06053	499	MobiDBLite	consensus disorder prediction	459	499	-	-
	Seca11g06053	499	ProSitePatterns	Protein kinases ATP-binding region signature.	40	63	IPR017441	GO:0005524
	Seca11g06053	499	FunFam	Non-specific serine/threonine protein kinase	23	331	-	-
	Seca11g06053	499	ProSiteProfiles	NAF domain profile.	339	363	IPR018451	GO:0007165
	Seca11g06053	499	SUPERFAMILY	Protein kinase-like (PK-like)	30	302	IPR011009	-
	Seca11g06053	499	FunFam	Non-specific serine/threonine protein kinase	341	459	-	-
	Seca11g06053	499	Pfam	NAF domain	341	397	IPR004041	GO:0007165
	Seca11g06053	499	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	20	453	-	-
	Seca11g06053	499	ProSiteProfiles	Protein kinase domain profile.	34	288	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g06053	499	SMART	serkin_6	34	288	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g06053	499	Gene3D	Transferase(Phosphotransferase) domain 1	24	342	-	-
	Seca11g06053	499	Gene3D	Kinase associated domain 1, KA1	343	461	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g06053	Seca-Chr11	160871976	160873475	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g06053	29	493	CBL-interacting serine-threonine protein kinases	AT4G18700	75.260	0.0	734

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Seca11g06053		Pkinase	7.5e-75	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g06053	-		-	gmx:100807567	777.704