Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06048 ATGGCTCAAGTACTAGAAAGTGGCCAAAACAGTGAAGGGATTAAACTGTTTGGTGCAACGATTAAGTTACATGGAAGACAAAGAAATGAAGAAAAAAGCGGTAGTGAAGATGGAACAGAGGATCAGGAGAAAAGGCCTGATAAGATCATAGCATGCCCAAGATGCAAGAGCATGGAAACCAAATTCTGTTACTTCAATAACTATAACGTCAATCAACCTAGGCATTTCTGCAAGGGCTGCCAGAGATACTGGACGGCCGGTGGGGCCCTCCGCAACGTCCCCGTAGGTGCCGGCCGCCGAAAGGCCAAGCCACCATGCCTTGGCCCCAATGGTTTCCCGGAGTTTGATGCATCCACCGTTCACCAGTTTGGTTTAGATGAATGGAATCTTGCCACCATGGTTCACGGTGATTTCCGGCAGCTTTTTGCATCTAAACGGCGGAGGACTACCTCAGCTCAGCAGGAAGGTCAATAA 474 0.4873 MAQVLESGQNSEGIKLFGATIKLHGRQRNEEKSGSEDGTEDQEKRPDKIIACPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKAKPPCLGPNGFPEFDASTVHQFGLDEWNLATMVHGDFRQLFASKRRRTTSAQQEGQ. 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06048 157 PANTHER CYCLIC DOF FACTOR 2 30 103 IPR045174 GO:0003700|GO:0006355
Seca11g06048 157 ProSitePatterns Zinc finger Dof-type signature. 52 88 IPR003851 GO:0003677|GO:0006355
Seca11g06048 157 Pfam Dof domain, zinc finger 48 103 IPR003851 GO:0003677|GO:0006355
Seca11g06048 157 ProSiteProfiles Zinc finger Dof-type profile. 50 104 IPR003851 GO:0003677|GO:0006355
Seca11g06048 157 MobiDBLite consensus disorder prediction 25 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06048 Seca-Chr11 160746000 160748378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06048 9 154 C2C2-Dof Transcription Factor Family AT2G34140 55.689 2.29e-53 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca11g06048 zf-Dof 3.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06048 - - pvu:PHAVU_002G238400g 229.18