Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06041 ATGGCTGTCTGCCTGAAAAATCTCATCCCTTTCTTCTTCTGTTTCTTCACTGTGTTTGCAGAAACTATTACTCCCCATGATCAATGCAAAGAATCAAGCTGTGACAGCATCCATGGACCATCCATCAGATTCCCCTTCAGACTAAGAGGAAGACAACCACAATGGTGTGGCTATAATAATCCTTCGTTTCAACTATACTGCACCGATACCAACCACACAGTGCTTGAACTCCCATTCTCTGTTAAGGCTTTAGTCAAAACCATAGACTACACATCACAGCTCATAACTGTATCTTATCCTCAAGTTTGCCTTAACAAACAAATTGCAAATTTCGATATATCAGCATCTCCTTTTATGTTCACCCATGACTTTGAACTCAACGAATATGCATTGTTCAATTGTTCAGGGTCAGGGACGTCTCACAGAAACACAGATGACAGCAATATAATAACATCTGGAAATTTTTCTTGCCTTAATGTACCAGGCTTTGAAGTTATAGCAGTAAATTCCAGATTATCAATAATCTCGACACCCTTATTGTCTTGCACCAGAATCCAAAGCCATGTTTTATTGCCTAATTCTTTGTTTAATAACGTTGATGCTGGTTTAAACTGGTTCCAACCAGACTGCAAAAGCTGCGAAAGAGAAGGTGGCCAATGCAAGGCCAAAGAAAACAAATCAAAACACCAATTCGAATGTATAGGCATTCCCCCTACAGGTTCATCAAAATGGAAAGTTCTTGTTGGTGGAATCCTAGGCCCTTTTTCGCTGATATTTGTTGGAGTCTTAGCATATTGTATCTATGTAGCTGTCATTGAAAGGAAGAGTTATAAAAGAATCAAAAAATTTCTGGAGGATTATAAAGCACTTAAGCCTGCCAGATACTCTTATGCTGATATAAAGAGAATCACAAATCAGTTTAAGGAAGAACTGGGGCAGGGAGCTTATGGATCTGTCTTCAAAGGAAAGCTATCAAATGAAATTCAGGTCGCTGTTAAGGTCCTAATCACTACAACTGGGAATGGCCAAGAGTTCATCAATGAAATGGAAGCAATGTGTCAAATTCACCATGTCAATGTGGCACGCTTGGTTGGCTTTTGTGCAGATGGACTCAGAAGAGCTTTGGTGTATGAATTCTTACCAAATGGTTCATTGCAGAAATTCATATCATCTGCAGACACTAAGGATGTCTTTCTAGGTTGGGAAAGGCTACAAGATATTGCTCTCGGTATAGCCAAGGGAATTGAGTATCTTCACCAAGGTTGTGATAAAAGAATTCTCCATTTTGATATCAAACCTCATAATGTATTGCTAGATGACAATTTCACACCCAAAATCTCTGATTTTGGTTTGGCCAAGCTTTGTTCCAAGGACCAAAGTATTGTGTCAATGACCACAGCTAGGGGCACTTTGGGCTACATTGCGCCAGAAGTATTTTCTAGGAACTTTGGTAATGTATCCTATAAGTCAGACGTTTATAGTTTTGGGATGCTGCTGCTTGAAATGGTAGGAGGAAGGAAAATCACTGATGTCACAGCAGAAAATAACAGCCAAGTCTATTATCCACAGTGGATATATAACCTTCTAGAGAACAATGAAGACATACAGATCCATATAGAAGGAGAAGAAGACACTAGAGTTGCGAAGAAGCTATCAATTGTGGGACTATGGTGCATTCAGTGGCACCCAGTAAATCGTCCAACCATGAAAGCTGTGGTTCAAATGCTTGAAGGAAATGGAAAGAAGTTAGAGATGCCTCCTAATCCTTTTGCCTCTACATCTGCAAGTAGAGCAAGTTCTAGATTTGGTACTGGACGTCTGAACCTAGAGCTAGATGTTATCTCAGAAATAGAGTGA 1857 0.3974 MAVCLKNLIPFFFCFFTVFAETITPHDQCKESSCDSIHGPSIRFPFRLRGRQPQWCGYNNPSFQLYCTDTNHTVLELPFSVKALVKTIDYTSQLITVSYPQVCLNKQIANFDISASPFMFTHDFELNEYALFNCSGSGTSHRNTDDSNIITSGNFSCLNVPGFEVIAVNSRLSIISTPLLSCTRIQSHVLLPNSLFNNVDAGLNWFQPDCKSCEREGGQCKAKENKSKHQFECIGIPPTGSSKWKVLVGGILGPFSLIFVGVLAYCIYVAVIERKSYKRIKKFLEDYKALKPARYSYADIKRITNQFKEELGQGAYGSVFKGKLSNEIQVAVKVLITTTGNGQEFINEMEAMCQIHHVNVARLVGFCADGLRRALVYEFLPNGSLQKFISSADTKDVFLGWERLQDIALGIAKGIEYLHQGCDKRILHFDIKPHNVLLDDNFTPKISDFGLAKLCSKDQSIVSMTTARGTLGYIAPEVFSRNFGNVSYKSDVYSFGMLLLEMVGGRKITDVTAENNSQVYYPQWIYNLLENNEDIQIHIEGEEDTRVAKKLSIVGLWCIQWHPVNRPTMKAVVQMLEGNGKKLEMPPNPFASTSASRASSRFGTGRLNLELDVISEIE. 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06041 618 SMART serkin_6 305 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06041 618 Pfam Protein kinase domain 307 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06041 618 Gene3D Transferase(Phosphotransferase) domain 1 380 585 - -
Seca11g06041 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672|GO:0006468
Seca11g06041 618 ProSiteProfiles Protein kinase domain profile. 305 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06041 618 PANTHER RUST RESISTANCE KINASE LR10-RELATED 277 594 IPR045874 GO:0004672
Seca11g06041 618 FunFam PR5-like receptor kinase 380 588 - -
Seca11g06041 618 SUPERFAMILY Protein kinase-like (PK-like) 289 577 IPR011009 -
Seca11g06041 618 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Seca11g06041 618 FunFam serine/threonine-protein kinase PBS1-like 255 379 - -
Seca11g06041 618 Gene3D Phosphorylase Kinase; domain 1 278 379 - -
Seca11g06041 618 Pfam Wall-associated receptor kinase galacturonan-binding 29 98 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06041 Seca-Chr11 160698991 160702828 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06041 26 589 Receptor kinase-like Gene Family AT1G66910 38.188 5.39e-114 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca11g06041 Pkinase 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06041 - - tpra:123914140 1012.68