Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06039 ATGACCAAATCTTTCAAGCATAAGTTAGGTGAGGGAGGCTATGGTTCTGTCTATAAAGGGGAGCTTCAAAGCAAACGCATAGTAGCTGTTAAGGTATTGACCAAGTCCCAAACCAATGGACAAGAATTCATCAGTGAAGTTGCAACCATTGGAAGAATTCATCATGTCAATGTGGTGCAGCTCATTGGATTTTGTGCTGAGAGAACAAAACAAGCTCTGGTGTATGAGTTCATGCCTAATGGGTCTCTTGATAAACACACATTTTCACAAGAGCAAGGAAGCTCATCATTAAGCTATGAGAAAATCCATGACATTGCTCTTGGAATAGCTCTTGGAATTCAATACTTACACCAAGGCTGTGACATGCAAATCATACACTTTGATATAAAACCTCATAACATCCTTCTTGATGAGAATTTCAACCCAAAGATATCTGACTTTGGACTGGCAAAATTGTACAGAACAGATCAAAGCACTTTATCTCTAACAGCAGCAAGAGGAACAATGGGATACATGGCTCCTGAGTTGTTGTACAAGAACATTGGAAGCATCTCTTACAAAGCAGATGTTTATAGTTTTGGGATGATGCTGATGGAAATGGCAGGTAGAAAAAAGAACACAAATGTTGTGGAGAATTCTTGGCAAAACTACTTTGCTAAATGGGTTTATGACCAATTTGAGGAAACAATACATCTAAACAATGTCACAGAAGAGGACAAGAATATAGCAATGAAGATGATTGTGATAGCCTTAAAATGCATACAAATGAAGCCAGGTGATCGTCCCTCAATGAATGAAGTGATAGAGATGCTTGAAGGAGATGATGTGCCCCAAGATGTTCTTCCTCCTGATCCTGAACCTCTCCTAACTTGGCAAAGGATGTCAGCACATGAAAATGAAATTGATGACAACTGA 915 0.3913 MTKSFKHKLGEGGYGSVYKGELQSKRIVAVKVLTKSQTNGQEFISEVATIGRIHHVNVVQLIGFCAERTKQALVYEFMPNGSLDKHTFSQEQGSSSLSYEKIHDIALGIALGIQYLHQGCDMQIIHFDIKPHNILLDENFNPKISDFGLAKLYRTDQSTLSLTAARGTMGYMAPELLYKNIGSISYKADVYSFGMMLMEMAGRKKNTNVVENSWQNYFAKWVYDQFEETIHLNNVTEEDKNIAMKMIVIALKCIQMKPGDRPSMNEVIEMLEGDDVPQDVLPPDPEPLLTWQRMSAHENEIDDN. 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06039 304 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Seca11g06039 304 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 291 IPR045874 GO:0004672
Seca11g06039 304 FunFam PR5-like receptor kinase 78 281 - -
Seca11g06039 304 SMART serkin_6 3 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06039 304 Gene3D Transferase(Phosphotransferase) domain 1 82 280 - -
Seca11g06039 304 PIRSF ILK 2 275 - -
Seca11g06039 304 ProSiteProfiles Protein kinase domain profile. 3 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06039 304 SUPERFAMILY Protein kinase-like (PK-like) 5 273 IPR011009 -
Seca11g06039 304 FunFam serine/threonine-protein kinase PBS1-like 1 77 - -
Seca11g06039 304 Gene3D Phosphorylase Kinase; domain 1 3 81 - -
Seca11g06039 304 Pfam Protein kinase domain 6 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06039 304 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06039 Seca-Chr11 160686735 160687649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06039 1 289 Receptor kinase-like Gene Family AT5G38280 52.013 2.26e-102 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca11g06039 Pkinase 8.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06039 - - tpra:123914142 512.686