Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06026 ATGGGATATCAAACCCAAATGGCCAAAGAGGACAGACACAGAGAAAAACTGATGATAAAGAGCAAACCCAAATTTGTTGGGGTGAGACAAAGGGCTTCAGGGAAATGGGCTGCAGAGATCAAAGACACATCAAAGAAGATTAGGATGTGGCTTGGAACCTATCAAACTGCTGAAGAAGCTGCTAGAGCTTATGATGAAGCTGCTTTCCTCCTTAGAGGCTCAAACACTCGCACCAACTTCTCTACTCATGCCATTGCTACTCCCAATTCTCCTATTTCTCTCAAACTCAGAAACCTCCTTCATCGTAAAGCCATCTCAAATCAAATCCAAATTCAAAACCAATCCACTATCATAAGTCCCACTTTCCAAAGTTCCTCTCCTAGTCCAAATGTTAGTGCCATCATGGTCATGGAAGACAATTACAATTACTCTAGTGAAGGTAAGTCTCTGTTTAGTGTTGCTCAGAATCAAGTCACTGATAATCCTTATGAGGTAGATATGAATATGATAAGCTGCTCACTGGGTGTGACACCAAATTCATCACAATTTGATTATTCTTGGCCATTGCCATTACCCCAACAAATGATTAATGAGTTACCATTACCAAAAGATGGTTTCAATGAAGAAAGGCAATTGTCTGCCTCAGTATATGCCATGAATGAGTGCTATGTGGAGGATATATATGGATCTAAGTATGAATATGATGTCAATTATCCTCTCTCTCACTTGTTCTGCTTCACTTGA 744 0.4005 MGYQTQMAKEDRHREKLMIKSKPKFVGVRQRASGKWAAEIKDTSKKIRMWLGTYQTAEEAARAYDEAAFLLRGSNTRTNFSTHAIATPNSPISLKLRNLLHRKAISNQIQIQNQSTIISPTFQSSSPSPNVSAIMVMEDNYNYSSEGKSLFSVAQNQVTDNPYEVDMNMISCSLGVTPNSSQFDYSWPLPLPQQMINELPLPKDGFNEERQLSASVYAMNECYVEDIYGSKYEYDVNYPLSHLFCFT. 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06026 247 FunFam ethylene-responsive transcription factor RAP2-11 23 82 - -
Seca11g06026 247 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Seca11g06026 247 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Seca11g06026 247 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 20 124 - -
Seca11g06026 247 Pfam AP2 domain 23 73 IPR001471 GO:0003700|GO:0006355
Seca11g06026 247 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Seca11g06026 247 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Seca11g06026 247 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Seca11g06026 247 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Seca11g06026 247 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06026 Seca-Chr11 160603145 160603888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06026 1 247 AP2-EREBP Transcription Factor Family AT5G19790 40.214 2.89e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca11g06026 AP2 3.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06026 K09286 - gmx:100809046 313.538