Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05954 ATGGATGGCGCGCTTCCCTCCTCCGCCGCAACTGTCGCCGCCGGTACCGGAGGTCCGGCGCCGTTCCTTCTGAAGACCTACGACATGGTGGACGATTCCTCCACCGACGACATCGTTTCGTGGAGCTCCACCAACACCAGCTTCGTCGTTTGGAACCCTCCCGAGTTCGCTCGCCTTCTTCTCCCAACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGTCAGCTCAATACCTATGGATTTCGAAAAATACATCCTGAGCGATGGGAGTTTGCCAATGATGATTTTATAAAAGATCAAAAGCATCTTCTTAAGAATATACACCGCAGAAAACCTATCCACAGTCATAGTCATCCTCCGGGTACTGTTGTAGATCAAGAAAGGGCAGCATTTGAGGAAGAAATAGAGAAACTTTCACGTGAGAAAAGTTCTCTTGAATCCAATATTTTTAACTTCAAACAACATCAGTCAACAGCAAAGGTTCGATTTGAAGAGTTTCAACAGCGATTAGATGCTATAGAGAAGAGGCAGAAACATTTGCTGAACTACTTTGAGAAGGCTCTTCATAATCCCACTTTTGTTGAACATCTTTCACGCAAAATTGAATCCATGGATTTATCAGCATATAATAAGAAAAGGCGTTTGCCTCAGGTTGATCACTTGCAGCCAGTTGCTGAAAGTAGCTTTATTGACAATCAGAGCAATCTTAGAATGGAGTTCGGGAATGTTTTCCATCAAGATTTCTCAAATAAACTCAGACTGGAATTATCACCCGCTGTTTCAGATATGAACTTAGTGTCACATAGCACACAGAGTTCAAATGAAGATGGGGAAAGCCCACATAAAAAGCTATCTGAAGGAGAACTGAAAGGAGTGCAGACAAGAACCGCTCTTGCATTTGCACCTGAAACATTAGAGCTTGCAGATACTGGGGCATCTTTTACTTTTAAGATGGATTCATGTTTATCACGAAGAGCAACGACTGCTGAGAGCTCAAAACTGCACTCTTTGGAGCCAAGTAGTGAAGAAGGTGATAGTAATATATCCTGCCAACTAAATCTAACTCTAGCATCTTGTCCATTTCCAGTCAACAGAAATTCATTCTCGGCCAGGTCACCCCAAATAGACTGTCAAGAAATTGGCAAATTGGCAGAATCAAGATTTTATGCCAGTGGTAAAGAATCTGATAATGGAGCTTCCTTAGATCGACGAAATGTAGCTAATGAGGGTACCAATTTAGCTTCCACACAGGAGGCTCCAAGTAACAACCAAGTTAACCCAGCCGCTCCAGATAGAGTGAATGATGTTTTTTGGGAACAGTTCCTTACTGAAAGACCAGGTTGTTCAGACAATGAAGAGGCTATATCCAACTATAGAGCCAACCCCTATGATGAACAAGAGGAAGGGCGGTCAGTTCATGGAATCTCTAGAAACATTAAGAATATGGATCAGCTCACACTTTGA 1467 0.4294 MDGALPSSAATVAAGTGGPAPFLLKTYDMVDDSSTDDIVSWSSTNTSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIHPERWEFANDDFIKDQKHLLKNIHRRKPIHSHSHPPGTVVDQERAAFEEEIEKLSREKSSLESNIFNFKQHQSTAKVRFEEFQQRLDAIEKRQKHLLNYFEKALHNPTFVEHLSRKIESMDLSAYNKKRRLPQVDHLQPVAESSFIDNQSNLRMEFGNVFHQDFSNKLRLELSPAVSDMNLVSHSTQSSNEDGESPHKKLSEGELKGVQTRTALAFAPETLELADTGASFTFKMDSCLSRRATTAESSKLHSLEPSSEEGDSNISCQLNLTLASCPFPVNRNSFSARSPQIDCQEIGKLAESRFYASGKESDNGASLDRRNVANEGTNLASTQEAPSNNQVNPAAPDRVNDVFWEQFLTERPGCSDNEEAISNYRANPYDEQEEGRSVHGISRNIKNMDQLTL. 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05954 488 MobiDBLite consensus disorder prediction 464 488 - -
Seca11g05954 488 MobiDBLite consensus disorder prediction 267 290 - -
Seca11g05954 488 Pfam HSF-type DNA-binding 22 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca11g05954 488 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 16 280 IPR027725 -
Seca11g05954 488 FunFam Heat shock transcription factor 1 15 112 - -
Seca11g05954 488 MobiDBLite consensus disorder prediction 276 290 - -
Seca11g05954 488 SUPERFAMILY "Winged helix" DNA-binding domain 18 111 IPR036390 -
Seca11g05954 488 ProSitePatterns HSF-type DNA-binding domain signature. 61 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca11g05954 488 SMART hsfneu3 18 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca11g05954 488 PRINTS Heat shock factor (HSF) domain signature 22 45 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca11g05954 488 PRINTS Heat shock factor (HSF) domain signature 60 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca11g05954 488 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca11g05954 488 Gene3D - 16 112 IPR036388 -
Seca11g05954 488 Coils Coil 129 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05954 Seca-Chr11 159827566 159831191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05954 1 488 HSF AT4G13980 56.768 1.56e-180 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca11g05954 HSF_DNA-bind 3.6e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05954 K09419 - gmx:100816484 820.461