Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05942 ATGACTCACCCCAAAACCCTACTTTCTCTCTCATTCTCATTCTGTATCACCATCATCACCGTCATTGCCGATGACGCTGCCGTCATGTCGAAGCTTCTCGAATCTCTGAACCCACCACCCTCCGGCTGGTCATCAAAGACTCCATTCTGCCAATGGAACGGCATCAAGTGCGATTCCTCCAACCGCGTCACCACCATAAGCCTCGCTTCTCACTCCCTCACCGGAACACTCCCCTCTGATCTCAACTCCCTCTCTCAACTCACCTCTCTTTCTCTCCAAGACAATTCCCTCTCCGGTCCCCTTCCTTCCCTCGCTAACCTCTCCTCCCTCAAAACCGCCTTCCTCGGTCGTAACAACTTCACGTCCGTCCCTTCCGCCGCATTTGCCGGCCTCACCTCCCTCCAGACCCTCAGCCTCGGTGATAACCCTAACATTTCCCCCTGGACCTTCCCCACCGAGTTGACTCAGTCCTCTAACCTCAACAACCTCGACCTTGGAACCGCCGGTATCACCGGTCAGTTACCAGAAGACTTCTTCGACAAGTTACCGAGTCTCCAGAACGTTCGTCTCTCCTACAATAACCTAACCGGTGGATTACCCAACTCTCTCGCTGGTTCTTCAATCGAAAATCTATGGCTCAACAATCAGCAAAACGGGTTATCGGGCACAATTGACGTGCTTTCCAACATGACGCAGGTTTCTCAGGTATGGCTTCATAAGAACCACTTCACAGGTCCCATTCCCGATTTGTCGCAATTGAAGAACCTGTTTGATCTGCAGTTAAGGGATAACCAGTTAACCGGTTTGATTCCGGGTTCTCTAATGAGTCTTTCGAGTTTGCAGAATGTTTCTTTGGATAACAATGTGCTTCAGGGTCCTGTCCCTGTGTTTGGTAAAGGTGTGAAGGTCACTCTTGATGGGATTAATAGCTTTTGTAGAGACACTCCTGGACCTTGTGATGATAGGGTGATGGTTTTGCTTCAAATTGCTGAGGGGTTTGGGTATCCTATTAGGTTGGCGGATTCATGGAAAGGGAATGATCCTTGTCAAGGTTGGAGTTTTGTTGTGTGTAGTGGGGGGAAGATTATCACAGTGAATTTAGCGAAGCAGGGTTTGCAGGGAACCATTTCACCTGCGTTTGCCAATTTGACTGATTTGAGGGGCTTGTATCTCAATGGGAATAATTTAACAGGTTCTATACCTGAGAGCTTGACCACTCTGTCTCAGCTTGAGACTCTTGATGTGTCTAACAACAATCTGTATGGAGAGGTTCCAAAATTTCCACCAAAGGTGAAGTTAATAACTGAGGGTAATGTTTTGCTTGGGAAAAATCCTGGTTCTGGTGGTGGAGCAGATGGAACCAGTCCATCTGCAGGGTCTGCAACCGGTGGAAGTTCAGCTGGATCGCGGCATGGTACTTCACTGTCGCCGGGTTGGATTGCTGGTATAGTGATTATTATTGTGTTTTTTACTGCAGTGGTTTTGTTTGTGTCCTTCAAGTGTTATGCCAAAAACAGGACCGGGAAATTTGCAAGGTTTAATAATCATGAAAATGGGAAAGGAAATGTGAAACTTGATGTAATGAGTGTTTCTAATAGATATGGTGGTGTTCCAAGTGAGTTGCAAAGCCAGAGCAGTGGTGATCATAGTGACCTTCATGCTCTTGAGGGTGGAAATGCTACAATTTCAATTCAAGTTCTTAGGCAAGTAACTAATAATTTCAGTGAGGACAACATACTAGGCAGGGGAGGGTTTGGAGTTGTTTATAAAGGGCAGTTGCATGATGGAACTAAAATTGCTGTCAAGAGGATGCAATCTGTTGCAACGGGAAGCAAAGGGATGAATGAGTTCCAAGCAGAGATTGCAGTTCTTAGTAAGGTTAGGCATAGACATTTAGTTGCTCTTTTAGGATATTGCATCAATGGCAATGAGAGGCTTTTGGTGTATGAGTATATGCCTCAAGGGACACTAACACAGCATCTGTTTGAATGGCGTGAACATGGGTATGATCCTTTGACATGGAAACAAAGGGTCACAATAGCTTTGGATGTAGCAAGGGGGGTGGAATACTTGCACAGTTTAGCTCAGCAAAGCTTCATCCACAGGGACTTGAAACCATCAAACATACTATTAGATAATGACATGAGAGCAAAGGTTGCAGATTTTGGGTTGGTAAAACATGCACCAGATGGGAAGTATTCTGTCGAGACACGGTTGGCTGGAACATTTGGATATCTTGCACCTGAGTATGCAGCTACTGGAAGAGTGACAACCAAAGTGGATGTTTATGCATTTGGAGTAGTTTTGATGGAACTGATCACCGGTAGAAAGGCATTGGATGATACTGTGCCTGATGAAAGGTCTCACTTGGTTACGTGGTTGCGTAGGGTACTAATTAACAAGGAAAACATTCCAAAGGCAATTGATCAAATTCTCAACCCTGATGAGGAAACCATGGAGAGCATATATAAAGTAGCTGAGCTGGCAGGTCATTGCACTGCTCGTGAACCATACCAAAGGCCAGATATGGGGCATGCAGTGAATGTCTTGGTTCCTCTTGTGGAGCAATGGAAACCCACTAGTCATGAAGAAGAAGACAGCTATGGCATTGACCCTCAAATGAGCCTTCCTCAAGCACTACAAAGGTGGCAAGCCAATGAAACCTCATCCACAGTATTTAATGACATGTCCTTGTCACAAACTCAATCAAGCATCCCCTCTAAACCTTCAGGGTTTGCAGACTCCTTTGCTTCAATGGATGGCCGGTAA 2769 0.4586 MTHPKTLLSLSFSFCITIITVIADDAAVMSKLLESLNPPPSGWSSKTPFCQWNGIKCDSSNRVTTISLASHSLTGTLPSDLNSLSQLTSLSLQDNSLSGPLPSLANLSSLKTAFLGRNNFTSVPSAAFAGLTSLQTLSLGDNPNISPWTFPTELTQSSNLNNLDLGTAGITGQLPEDFFDKLPSLQNVRLSYNNLTGGLPNSLAGSSIENLWLNNQQNGLSGTIDVLSNMTQVSQVWLHKNHFTGPIPDLSQLKNLFDLQLRDNQLTGLIPGSLMSLSSLQNVSLDNNVLQGPVPVFGKGVKVTLDGINSFCRDTPGPCDDRVMVLLQIAEGFGYPIRLADSWKGNDPCQGWSFVVCSGGKIITVNLAKQGLQGTISPAFANLTDLRGLYLNGNNLTGSIPESLTTLSQLETLDVSNNNLYGEVPKFPPKVKLITEGNVLLGKNPGSGGGADGTSPSAGSATGGSSAGSRHGTSLSPGWIAGIVIIIVFFTAVVLFVSFKCYAKNRTGKFARFNNHENGKGNVKLDVMSVSNRYGGVPSELQSQSSGDHSDLHALEGGNATISIQVLRQVTNNFSEDNILGRGGFGVVYKGQLHDGTKIAVKRMQSVATGSKGMNEFQAEIAVLSKVRHRHLVALLGYCINGNERLLVYEYMPQGTLTQHLFEWREHGYDPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILLDNDMRAKVADFGLVKHAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRKALDDTVPDERSHLVTWLRRVLINKENIPKAIDQILNPDEETMESIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTSHEEEDSYGIDPQMSLPQALQRWQANETSSTVFNDMSLSQTQSSIPSKPSGFADSFASMDGR. 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05942 922 Pfam Leucine rich repeat N-terminal domain 24 58 IPR013210 -
Seca11g05942 922 Pfam Leucine rich repeat N-terminal domain 325 358 IPR013210 -
Seca11g05942 922 MobiDBLite consensus disorder prediction 898 922 - -
Seca11g05942 922 Pfam Protein tyrosine and serine/threonine kinase 577 846 IPR001245 GO:0004672|GO:0006468
Seca11g05942 922 FunFam receptor protein kinase TMK1 536 651 - -
Seca11g05942 922 SMART LRR_typ_2 107 130 IPR003591 -
Seca11g05942 922 SMART LRR_typ_2 253 276 IPR003591 -
Seca11g05942 922 SMART LRR_typ_2 182 205 IPR003591 -
Seca11g05942 922 SMART LRR_typ_2 383 407 IPR003591 -
Seca11g05942 922 ProSitePatterns Serine/Threonine protein kinases active-site signature. 699 711 IPR008271 GO:0004672|GO:0006468
Seca11g05942 922 SUPERFAMILY L domain-like 18 432 - -
Seca11g05942 922 FunFam receptor protein kinase TMK1 652 869 - -
Seca11g05942 922 CDD STKc_IRAK 580 853 - -
Seca11g05942 922 Gene3D Ribonuclease Inhibitor 321 444 IPR032675 -
Seca11g05942 922 Gene3D Ribonuclease Inhibitor 24 316 IPR032675 -
Seca11g05942 922 PANTHER OSJNBA0070M12.3 PROTEIN 10 922 - -
Seca11g05942 922 FunFam Leucine-rich repeat receptor-like kinase 321 444 - -
Seca11g05942 922 MobiDBLite consensus disorder prediction 450 471 - -
Seca11g05942 922 Gene3D Phosphorylase Kinase; domain 1 538 651 - -
Seca11g05942 922 SUPERFAMILY Protein kinase-like (PK-like) 562 894 IPR011009 -
Seca11g05942 922 SMART serkin_6 574 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05942 922 MobiDBLite consensus disorder prediction 444 471 - -
Seca11g05942 922 FunFam Receptor-like kinase TMK4 23 317 - -
Seca11g05942 922 ProSiteProfiles Protein kinase domain profile. 574 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05942 922 Pfam Leucine rich repeat 365 420 IPR001611 GO:0005515
Seca11g05942 922 Pfam Leucine rich repeat 85 142 IPR001611 GO:0005515
Seca11g05942 922 ProSitePatterns Protein kinases ATP-binding region signature. 580 602 IPR017441 GO:0005524
Seca11g05942 922 Gene3D Transferase(Phosphotransferase) domain 1 652 873 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05942 Seca-Chr11 159720072 159723937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05942 63 850 Receptor kinase-like Gene Family AT5G07280 33.578 3.83e-96 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Seca11g05942 PK_Tyr_Ser-Thr 8.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05942 - - gmx:100286794 1360.13