Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05935 ATGCCCTTTCCAGGTACAAGCGTTGGAAGGCGAAGAAACACAGAGATTGTAAAAGGAGAAGCGTGTTCCATGAACAGTGTCTTACGTTGTCCACATGGGTGCGGGCCCTTCGTTTTCTACAGTGTTGTTCCAAACCAGTGTACCACTCCACTACTACTCTCACACCCTCTTCTTGGTATCCTTCTTTGTCTAAAAGCTTCTGTGTTTATCTTACTCTTCCAACTCTTCTTCTTCTTGTTATTATTCTGCTTCCATTTCATCAAAGTTTTGGTTTTTCTAGCCTTCCCCAACCTTCTTCTTGCACTGGTTTTGTTCTACTTGGTTGACTTCTACCTTTGTTTCATTGACTTTTTAGTCTTGGCAATGGATAACCAAGATCAAAGAAGAACTCACACTCCAGGGCACGAGAATCATGGAGTTCATGTATGTCACAAATGTGGATGGCCCTTTCCGAATCCACATCCAAGTGCCAAACATAGGCGTGCTCACAAGAAGATCTGTGGAACCATTGAAGGTTACAAACTGTGTGTCTCTGAGGGACAAACTCATTTGCACGGTTCAGATGATGAACATGTTTCTGATGATGATCACAAAACACCAGGCAACAATGTGAAGGGTAATGATGGAAATGGAGAAAAAATAATTAGATCAGAAGATGAGGTGTTTTCAGATGCAGTTGCAGACTTTTTGGATAGTGGACTAAGTCCAGGAAATAAGGAACCTTTGCAAAAAGATAGTTTGGATACAGATACTGCAGATGAGAGTCAGTTAATTGTGAAGTCAAGCAATGACTGCCAAATTGAAAATCCTAAACTTTTGCAAAGTGAAAGTGTTGGAGTGGGAAACACAGTGGAGTTGCAAGGTCAATTGTCAGGCTCTGCTGTGGATCCATTAGCAAGTTCAGTTGCAGATTTGAGGACTGAAGAATTGACTATTGTGCGTGGTGATGATTATTTAGGTTTGTCAAGAGACTCACATCCCAGCAAAGCTGAACCCATGCCAGATGTATTGCCTGAGAAAAATGTCTATGCTGGTGAAAATGTGAGAAATTGCGATTTGATATATGTTGTAAAGGAGACTAATTTGCAAGAAAAGGATGAGATAATATCAGAAAGAAATGTGGTTGAAGTTGTGGACTCATCTGATGATGTTGTAGGTGAAACATGTGAAGGAGTGTCTGCAACAGCAGTTAGTGATGCAGTTTCCTTGGATCATCAAGTGGGTGATGGAGCTGTTGATCTGAAGGAAAAGAACAGTGCTGAGTTTCATTCTTTGCTAGCCCAAGATGACCTTCATCTTGAGTTAAACTCATCTGTAATCACAAATGATGCACAGGTAGAATCTGCTCATGTGATGCAATTTGCTACTTCCAGTGATGTCAAAATTTTGCAGGAAAAGCGAGGAAATGTTAATATTGATCCACTTCGTATACATGATGATAGACCTGATGTAACACGTCCTCAATACGTGGAAGCTGAATCAAAGGATCCAGGTGCTGAGGAAAATAATTTTCATTTCAACACAAACCAATTGAGTGAAAAAAGTGATGTCCTCTCTTCAGATATGCATGATATGGATAGTAGCATGAAGACAGAGCAGAAGCATGCTGAAGATTGCACTGAAGTTTCTACAGTCAAGCTCACAGTTGAAAGTTATCAAATATCGCATGAAATTGGAGCATCTAAGAATGCTTTGAAAACTGAGGTGAATGAGAATCATATGGTTCACTTTTCTGAAGAGCAGGGACCTAATGATACTTGTGAAATTACACAACAGATAAGTTTACCTGAAGGTAGATTAATGGCCTCATCAAATGAGAGTCACAGGGATGCATCCATTGGGTCTGCAATCAGTGAAACAACTAGTGAAATTACTACAGACACAACTGAAATAAATGATGTAACTGTAGATGGCAAGGGTGTCAGAGCTAATGTGGAAAATGACACTGAAATTATATTGAAAGATCTTCAACCCAGTGACCTCTTGCAATCAGAAGTCAATAAATCAAGTGACTTATTGAGGAGTGATGATGGTGGAGAAATGGGTAAAATTGAACAATGTGATATAATTGATGCTCAATGTAAAGAAAGGAACACTGAGAGAGATACTTCATCACCTAAATTTGCTAGCAGTCACTTTGAAAGCCCAGTTATTTTGGATGCTGTAATTGCTGAGTCTGTGAGAAAGTCTAATGGTACAGAATGTGCAAATATAGATTCACTATCAGCTGCCCAGGAAAAAGAAGATGAAATCAATAGCAATATCAAAATAAATGAAGAATATAACAGATCTGATGGTACTTCTATTGATTCACATGAAGTACAGGATGCAGAACTATCAGTGAAGGTTGCAGAAGACCTTGCCACAAAGTATGCATCAGTTTCTTTAAATGCTGAGCCTTCTGCTCAACATGGTTCTGCTGTTGAAGATAATCCAGGTGGAGAGCCTGGTAGGGAAATGTCTGGGATTAGTGCTGTGCCTGTTCAAGATCAAAGTGGCGGTAATAACTTGGTTAAACATGGTTCATCTGGATTTGATGCTTCAGTTGACTCTGGTAGCCGGTGTGACAGTTTGGAGGGCAACTGGGGCTCTGTTTCAGTTCTTTCAATGCAATCCGATGCACCAGCTGTTATTGATGCTGAAAATTTATCATCAACTGGTTTGCTGACATCAACAGAAGCAGGGAAATCAAACCAGAACAACCCAGAAGCTGCATCTGAGAAACAGCAATCTGGAAAATCAGAAATGTTTGAACCACCGTCTTTCATGACATTGGTTGAATCTAGCCATGTGGTTAACCCTAAAGGTGCTTCCTCTGAAGTCCAGAGCCGACAACAGCCAAATTCCACTTCACAGGCTGGTTGGTTTCCCACTCTAACTCAGGTTATGAATGAGTCACAAGGGAGAAAGAAGAATGAAGAAATAATAGCCAAGGTAACAAACTGGAGCACCAGTAAGGAACACACACCTCTGAAGAGCCTATTGGGTGAGCCAATCCATAGCAACAACCCCAAATCTCCAAAAGTTGAAGAAAATAATGGTTCTGGACTGACAACTGTCAACTCCATTCTGGGTCCTGAATCCCCTACAGCTCAATTGGAGAAAGGAGATGCTGCAAAAGAATGGAACTCTCCAGCAAGATATCCTGCAGACATCAAGAGAGAAAAAAGGAAATTCAAGAGTAGACCATACTGGATACAATTGGTATGCTGCTCAACGGTGGATCCTCGGCGGAGTTCTAACTCTCCCAGATCCTTTCTCTCATCATTCTCCACTGGTTCTTTATCAACCCAAGGCCAATACTCAAAGGAAACCACTTCTCTAATTGACTACCTTAATGCCAACTTCAAATTCACAAAATGTCAATCCATCTATATCTCAAACCGTATTTCAGGGAACAGCACCCTTCAAAAGACCTTGTCTGTGCTGAATTTTTTCAAACAAATTGGATTTTCTGAAGCCCAGATTCAGACCATGATTCATCAGAACCCTCAAATACTATTTTCTGATATTGATAAAACCCTGAGACCAAAAATTGAGTTCTTTCAACTATTGGGTTTTGAGGGTTCTGATGAGTTATGCAAGTTTATATCCAAGAATTCAAGTGTTTTGAATGCTAGTTTGGAAAAAACATTGGTCCCCTCTGTGGAAACTATTAGGAAAATTATGTGCAATGAGAAACATTTTATTCAAGTTTTGCACAAATCTGGTGGCTGGATTCTCCCGAGGTACCAAAAATTTTTGGTCAACATTTCCTTCTTAGAGAGTTGTGGCATTGTTGGGTCTCAGGTTGCAATGCTACTCAAACGACAGTCAAGAATTTTGACTGCATCACAATCTTCTCTTAGAAACCATGTTTCGCGTGCTGTAGACTTGGGTTTCCATGTAAATTCAAGAATGTTGGTCCATGCGCTCTATACTTTAAGTTCTTTGAGCTACAAAACATTCAGGAGAAAGCTGGAGCTAATTCAGTACTTTGGGTTTTCCAAAGATGAGAGCCTGACAATGTTCCAAAAGGCTCCATATTTGGGTGGGGTATCGGAGAAGAAATTAAAGGTTGGAATGGAATTCTTCTTGCATACAGCTATGCTGCCAAAGTCAGTGTTGGTTCATCAGCCTAAGTTTTTAATGTATAGCATGGAGGGTCGAGTGCTTCCAAGATATAGAGTTTTTCAGCTCGTAATATCAAGAAATCTATGTAAGAAGGCCCCCAGTTATATTTATTTGTTAAGTTTGTCTGAGGAGGTGTTCTTGGACAAGTATATATCACAGTTCAGACAAAACGCGGAGGCATTATTGGTAGCTTACAAAGGTCACAAGGGTCATTATCTGAAAGCATAA 4341 0.4018 MPFPGTSVGRRRNTEIVKGEACSMNSVLRCPHGCGPFVFYSVVPNQCTTPLLLSHPLLGILLCLKASVFILLFQLFFFLLLFCFHFIKVLVFLAFPNLLLALVLFYLVDFYLCFIDFLVLAMDNQDQRRTHTPGHENHGVHVCHKCGWPFPNPHPSAKHRRAHKKICGTIEGYKLCVSEGQTHLHGSDDEHVSDDDHKTPGNNVKGNDGNGEKIIRSEDEVFSDAVADFLDSGLSPGNKEPLQKDSLDTDTADESQLIVKSSNDCQIENPKLLQSESVGVGNTVELQGQLSGSAVDPLASSVADLRTEELTIVRGDDYLGLSRDSHPSKAEPMPDVLPEKNVYAGENVRNCDLIYVVKETNLQEKDEIISERNVVEVVDSSDDVVGETCEGVSATAVSDAVSLDHQVGDGAVDLKEKNSAEFHSLLAQDDLHLELNSSVITNDAQVESAHVMQFATSSDVKILQEKRGNVNIDPLRIHDDRPDVTRPQYVEAESKDPGAEENNFHFNTNQLSEKSDVLSSDMHDMDSSMKTEQKHAEDCTEVSTVKLTVESYQISHEIGASKNALKTEVNENHMVHFSEEQGPNDTCEITQQISLPEGRLMASSNESHRDASIGSAISETTSEITTDTTEINDVTVDGKGVRANVENDTEIILKDLQPSDLLQSEVNKSSDLLRSDDGGEMGKIEQCDIIDAQCKERNTERDTSSPKFASSHFESPVILDAVIAESVRKSNGTECANIDSLSAAQEKEDEINSNIKINEEYNRSDGTSIDSHEVQDAELSVKVAEDLATKYASVSLNAEPSAQHGSAVEDNPGGEPGREMSGISAVPVQDQSGGNNLVKHGSSGFDASVDSGSRCDSLEGNWGSVSVLSMQSDAPAVIDAENLSSTGLLTSTEAGKSNQNNPEAASEKQQSGKSEMFEPPSFMTLVESSHVVNPKGASSEVQSRQQPNSTSQAGWFPTLTQVMNESQGRKKNEEIIAKVTNWSTSKEHTPLKSLLGEPIHSNNPKSPKVEENNGSGLTTVNSILGPESPTAQLEKGDAAKEWNSPARYPADIKREKRKFKSRPYWIQLVCCSTVDPRRSSNSPRSFLSSFSTGSLSTQGQYSKETTSLIDYLNANFKFTKCQSIYISNRISGNSTLQKTLSVLNFFKQIGFSEAQIQTMIHQNPQILFSDIDKTLRPKIEFFQLLGFEGSDELCKFISKNSSVLNASLEKTLVPSVETIRKIMCNEKHFIQVLHKSGGWILPRYQKFLVNISFLESCGIVGSQVAMLLKRQSRILTASQSSLRNHVSRAVDLGFHVNSRMLVHALYTLSSLSYKTFRRKLELIQYFGFSKDESLTMFQKAPYLGGVSEKKLKVGMEFFLHTAMLPKSVLVHQPKFLMYSMEGRVLPRYRVFQLVISRNLCKKAPSYIYLLSLSEEVFLDKYISQFRQNAEALLVAYKGHKGHYLKA. 1447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05935 1446 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 122 1074 - -
Seca11g05935 1446 MobiDBLite consensus disorder prediction 825 841 - -
Seca11g05935 1446 Gene3D Transcription termination factor 3, mitochondrial 1222 1428 IPR038538 -
Seca11g05935 1446 MobiDBLite consensus disorder prediction 1005 1028 - -
Seca11g05935 1446 MobiDBLite consensus disorder prediction 796 841 - -
Seca11g05935 1446 MobiDBLite consensus disorder prediction 931 955 - -
Seca11g05935 1446 MobiDBLite consensus disorder prediction 890 916 - -
Seca11g05935 1446 SMART mt_12 1334 1365 IPR003690 GO:0003690|GO:0006355
Seca11g05935 1446 SMART mt_12 1366 1398 IPR003690 GO:0003690|GO:0006355
Seca11g05935 1446 SMART mt_12 1299 1329 IPR003690 GO:0003690|GO:0006355
Seca11g05935 1446 SMART mt_12 1194 1225 IPR003690 GO:0003690|GO:0006355
Seca11g05935 1446 SMART mt_12 1157 1188 IPR003690 GO:0003690|GO:0006355
Seca11g05935 1446 SMART mt_12 1265 1295 IPR003690 GO:0003690|GO:0006355
Seca11g05935 1446 MobiDBLite consensus disorder prediction 994 1040 - -
Seca11g05935 1446 MobiDBLite consensus disorder prediction 184 212 - -
Seca11g05935 1446 Pfam mTERF 1106 1286 IPR003690 GO:0003690|GO:0006355
Seca11g05935 1446 Pfam mTERF 1310 1418 IPR003690 GO:0003690|GO:0006355
Seca11g05935 1446 MobiDBLite consensus disorder prediction 184 202 - -
Seca11g05935 1446 ProSitePatterns Zinc finger C2H2 type domain signature. 143 163 IPR013087 -
Seca11g05935 1446 MobiDBLite consensus disorder prediction 232 251 - -
Seca11g05935 1446 FunFam Mitochondrial transcription termination factor-like 1208 1429 - -
Seca11g05935 1446 MobiDBLite consensus disorder prediction 605 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05935 Seca-Chr11 159630990 159646345 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca11g05935 mTERF 3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05935 - - gmx:100820280 1112.44