Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05907 ATGACACCTGGTCAAGAATATGATATTAATGATCTGTTTCAAGAGGCTCAAAGGAGATGGCTGAAGCCTGCAGAAGTGATGTACATTTTACAGAATCATGAAAAGTATCAGTTCACTCAAGAGCCCCCGCAACAGCCAACTAGTGGATCCCTGTTTCTGTTTAACAAAAGAGTCCTTCGTTTCTTCCGTAGAGATGGTCATACCTGGCGGAAGAAAAGAGATGGAAGAGCTGTGGGAGAAGCACATGAACGGCTGAAGGTTGGAAACGTTGAAGCCTTAAATTGTTACTATGCACACGGAGAACATAACCCTACTTTCCAGAGACGGAGCTATTGGATGTTGGATCCGGCGTATGAGCATATTGTTCTTGTGCATTACAGAGAAACAAGTGAGGGAAAGCCCAGTCCTGGACCTGGCGCACAATTGTCACCAAACTCGTCTTCTGCGTTTAGCCCGAGTCCTAGCTCCTATTCTACTCAGAACCCAGGGTCAACATCCATTCTTGATGATTCATATGAACCTAATCAGAGTTTCTCCAGTCCTGGATCTGCGGAAGTTAGCTCTGATATATTCATTGTGAACAATGGAATGGGTCACTTGGATGGAACAGATGCAGAATCAGGAACCTCAGCTGAACTTGAGATTACTCAAGCGCTGCGCCGATTGGAGGAGCAGTTAAGTTTGAATGAGGAGAACTTTGAAGAAATTGCTCCTTTCTACAATGAACACGAAACTGCACGTGATTCAAACCCTCAGCACCATCAAGGGGTGATCGGCAAACAAGAGAAATCTGCAGCTTTCTCTGGACCAGATGATCAAGGGCTATTTTACAATGGATATAATGGAAGGCAAGGTGATGGTGGTAAACATTATCGTGAATTACTAGACCATGGTTGTCCTGATGGAAATGAAAAGGCTTTATCTTGGACAGACGTGATGGAATCATGTAAGCCCTCATCTGCAGCCAAGGTACCCCAGAAAAATGTATACATGCCAGCTGGAAATGAAAATTCACCATCCTCTTCAAGAAGGGAGCCGGTTGTAAACCAGGAAAACTGCCGCTGGCTAAACTTCAATAATAATAATAATGCTGGAAACTGTATGATTTACTTTCACCTTATTAATTCAACATCATTTCTGGTTTATTTTGGAGTTTCTTCATCTGATTCTGATGCGCCTCCCATGTTACCAGCTGTTTTCTCGCTACCTCAATGCGTTGGTGGAGTCAAACATCCTCCATATTCTTCTATAGTAGAAACACAAGAAATTGGTTCTGACTACTATGCAACATTGTTTGACCAAAGCCAGATTGGAGCACCGCTGGATGCAGGTTCAAGCTTAACTGTAGCACAAAAACAGAAATTTACTATTAAGGCAGTCTCTCCAGAATGGGGTTATGCCTCTGAGACTACAAAGGTCTTCATTATTGGGTCTTTTCTCTGTCATCCCTCGGATTCTACCTGGGCCTGTATGCTTGGTGATGTTGAAGTTCCTGTTGAGATAATTCAGGATGGTGTAATTTGTTGTGAAGCTCCATCTCACCTTCCTGGAAAGGTTACTCTGTGCATTACTTCTGGAAACCGGGAGTCCTGCAGTGAAGTCAGAGAGTTTGAGTATCGCAACAAGGCCACTAGTTTCACCCGCAGTACTCCGTTGGAAACAGAAACCGCAAGAAGTCCAGATGAGCTCTTATTACTTGTTAGATTTGGCCAGATGCTCCTTTCTCCATCAACTATAAAGAATGACAACATTGAATCTGGAGTTCCTCTCATAAAACAGAAAGCTGATGATGATTCATGGAGCCATATTATAGAGGCTCTTCTAGTTGGCAGTGGAACTTCATCTAGTACTATAGATTGGCTTCTTGAAGAGCTTCTAAAGGATAAGCTGCAAATGTGGCTTTCTTGCAAATCCCAGCAAGTAGATGAAGAGACAGGCTGTTCTTTGTCCAAGAAGGAGCAGGGGATTATTCACATGGTTGCTGGATTGGGTTTTGAGTGGGCCTTGAACCCTATTCTCAGTTGTGGTGTGAATATCAATTTCCGTGACATCAATGGGTGGACTGCCCTTCATTGGGCTGCACGTTTTGGAAGGGAAAAAATGGTTGCTTTGCTTATAGCTTCTGGTGCATCTGCTGGAGCTGTGACAGATCCAAGTGCACAAGATCCAATTGGTAAAACTGCTGCATCGATTGCAGCCAGCAATGGGCATAGGGGACTAGCAGGTTATCTTTCAGAGGTAGCTCTAACAAGTCATCTGTCTTCGCTTACCCTGGAAGAGAGTGAGCTATCAAAAAGTTCAGCTGAGTTTCAGGCAGATTTAACTGTTAGTAATGTCTCCAATGAAAATATTTCTGCCAGTGCGGATCAGGCTTCACTCAAAGATACCTTGGCTGCTGTTAGAAATGCAACTCAGGCAGCTGCACGGATACAGGCTGCTTTTCGATCACACTCCTTTAGAAAACGGAGAGCAAGAGAAGCAGTTTCTTCTGGTATAGACGGATATGGTATCAGTGCAGGTAGCATTGGTAACATTCCAGAGCTTTCTGCTATGTCAAAACTTGCCTTTCGGAACTCACGTGAGCATAATTCAGCTGCCTTATCAATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGATTTCTTAGCATTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTACCAGGTTAGGAAGCATTACAAGGTATTATGGGCGGTTGGAATCTTGGACAAGGTTGTGCTGCGGTGGCGGAGAAAAGGAGCTGGTTTACGAGGCTTCCGACAGGAGATGGAGATTAATGAAAATGAAGATGAAGATATTCTCAAGATCTTCAGAAAACAGAAAGTTGATGTAGAAATTGAGGAGGCTGTTTCACGGGTGCTATCCATGGTCGACTCTCCAGATGCTCGTCAGCAATATCATCGCATGCTTGAGAAGTTTCGTCAAGCCAAGGCTGAACTTGCGGGGACGAGTGAAGAAACATCATTATCAACCTCTGTAGGGGATACTTTCAAAATGGAATCTCTAGGGAATACTTTCAATATGGAAGATGATTTTTATCAATTTCCCTAG 3087 0.4367 MTPGQEYDINDLFQEAQRRWLKPAEVMYILQNHEKYQFTQEPPQQPTSGSLFLFNKRVLRFFRRDGHTWRKKRDGRAVGEAHERLKVGNVEALNCYYAHGEHNPTFQRRSYWMLDPAYEHIVLVHYRETSEGKPSPGPGAQLSPNSSSAFSPSPSSYSTQNPGSTSILDDSYEPNQSFSSPGSAEVSSDIFIVNNGMGHLDGTDAESGTSAELEITQALRRLEEQLSLNEENFEEIAPFYNEHETARDSNPQHHQGVIGKQEKSAAFSGPDDQGLFYNGYNGRQGDGGKHYRELLDHGCPDGNEKALSWTDVMESCKPSSAAKVPQKNVYMPAGNENSPSSSRREPVVNQENCRWLNFNNNNNAGNCMIYFHLINSTSFLVYFGVSSSDSDAPPMLPAVFSLPQCVGGVKHPPYSSIVETQEIGSDYYATLFDQSQIGAPLDAGSSLTVAQKQKFTIKAVSPEWGYASETTKVFIIGSFLCHPSDSTWACMLGDVEVPVEIIQDGVICCEAPSHLPGKVTLCITSGNRESCSEVREFEYRNKATSFTRSTPLETETARSPDELLLLVRFGQMLLSPSTIKNDNIESGVPLIKQKADDDSWSHIIEALLVGSGTSSSTIDWLLEELLKDKLQMWLSCKSQQVDEETGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVNINFRDINGWTALHWAARFGREKMVALLIASGASAGAVTDPSAQDPIGKTAASIAASNGHRGLAGYLSEVALTSHLSSLTLEESELSKSSAEFQADLTVSNVSNENISASADQASLKDTLAAVRNATQAAARIQAAFRSHSFRKRRAREAVSSGIDGYGISAGSIGNIPELSAMSKLAFRNSREHNSAALSIQKKYRGWKGRKDFLALRQKVVKIQAHVRGYQVRKHYKVLWAVGILDKVVLRWRRKGAGLRGFRQEMEINENEDEDILKIFRKQKVDVEIEEAVSRVLSMVDSPDARQQYHRMLEKFRQAKAELAGTSEETSLSTSVGDTFKMESLGNTFNMEDDFYQFP. 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05907 1028 ProSiteProfiles IQ motif profile. 885 910 IPR000048 GO:0005515
Seca11g05907 1028 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Seca11g05907 1028 Pfam IPT/TIG domain 456 539 IPR002909 -
Seca11g05907 1028 FunFam Calmodulin-binding transcription activator 2 450 544 - -
Seca11g05907 1028 MobiDBLite consensus disorder prediction 245 281 - -
Seca11g05907 1028 ProSiteProfiles Ankyrin repeat region circular profile. 685 711 - -
Seca11g05907 1028 FunFam Calmodulin-binding transcription activator 4 isoform A 567 750 - -
Seca11g05907 1028 Gene3D - 580 750 IPR036770 -
Seca11g05907 1028 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 991 - -
Seca11g05907 1028 SUPERFAMILY E set domains 456 540 IPR014756 -
Seca11g05907 1028 Gene3D - 861 910 - -
Seca11g05907 1028 ProSiteProfiles IQ motif profile. 862 891 IPR000048 GO:0005515
Seca11g05907 1028 SMART CG_1_2 12 130 IPR005559 GO:0003677
Seca11g05907 1028 SMART ANK_2a 724 753 IPR002110 GO:0005515
Seca11g05907 1028 SMART ANK_2a 685 714 IPR002110 GO:0005515
Seca11g05907 1028 MobiDBLite consensus disorder prediction 129 184 - -
Seca11g05907 1028 Pfam IQ calmodulin-binding motif 864 882 IPR000048 GO:0005515
Seca11g05907 1028 Pfam IQ calmodulin-binding motif 887 906 IPR000048 GO:0005515
Seca11g05907 1028 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 852 909 IPR027417 -
Seca11g05907 1028 FunFam Calmodulin-binding transcription activator 2 861 909 - -
Seca11g05907 1028 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Seca11g05907 1028 ProSiteProfiles IQ motif profile. 803 831 IPR000048 GO:0005515
Seca11g05907 1028 Gene3D Immunoglobulins 450 545 IPR013783 -
Seca11g05907 1028 ProSiteProfiles Ankyrin repeat profile. 685 717 IPR002110 GO:0005515
Seca11g05907 1028 CDD IPT 456 540 - -
Seca11g05907 1028 Pfam Ankyrin repeats (3 copies) 667 745 IPR002110 GO:0005515
Seca11g05907 1028 MobiDBLite consensus disorder prediction 139 184 - -
Seca11g05907 1028 SUPERFAMILY Ankyrin repeat 654 746 IPR036770 -
Seca11g05907 1028 SMART iq_5 884 906 IPR000048 GO:0005515
Seca11g05907 1028 SMART iq_5 861 883 IPR000048 GO:0005515
Seca11g05907 1028 SMART iq_5 802 824 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05907 Seca-Chr11 159349318 159359294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05907 6 995 CAMTA Transcription Factor Family AT1G67310 52.089 0.0 926
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Seca11g05907 CG-1 6.3e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05907 K21596 - gmx:100786880 1546.18