Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05905 ATGAGTTTGTTCCATGTAGTTGGGTTTAGTCTAAAAGTTGGGCATCTTCTTTTGGTGCTATGTTGCTGGGTTGTGTCTGTCGTTTACCTTAACCGGTTCATTAGCAGTGGAATTACAGATACCAAGATAGGTTTTCTGGGTGATGGTGGCAAGATGTGGCTCAAATGGTGGGAGAAGATCTCAGGGCATGGTTACAAAATCCATCAACAGTACTACCAGTATATTTGGTCCAAGAAAGTGAAGAAAGCATTGTGGAGAAAGCTTTTACTGACATGGGTAGTTGGTTGGACTATAGTATCTTTGTGGATCTTCTTCTGCATGAGCTTACAAGCTACTGAGAAGAGGAAAGAAACTCTGGCAAGCATGTGTGATGAAAGGGCTAGGATGCTGCAGGATCAGTTTAATGTGAGTATGAACCATATCCAAGCCATGTCCATTCTGATCTCAACCTTCCACCATGCCAAGAACCCCTCAGCCATCGATCAGAGAACTTTTGCCAGGTACACAGAAAGAACAGCTTTTGAGAGGCCTCTTACAAGTGGTGTTGCATATGCTGTAAGGGTGCTTCATTCTGAAAGGGAACAATTTGAAAAGCAACAAGGCTGGACTATTAAGAGGATGGATACTCTGGAGCAGAACCCAGTTCATAAGGACGATTATGCTCCAGAGGCATTGGAGCCATCCCCCATTCAGGAAGAATATGCTCCTGTCATATTTGCACAGGATACAATTGCACATGTGATTTCTGTTGACATGCTTTCTGGAAAGGAAGACCGTGGAAATGTGTTGCGTGCAAGAGAATCAGGCAAAGGGGTTTTAACTGCACCCTTTAGGCTGCTCAAAACAAACAGTCTAGGGGTTATCCTGACATTTGCTGTCTACAAGAGAGATCTTCCATCAAATGCAACCCCAAATGAAAGGATTCAAGCAACTAATGGGTATCTTGGTGGGGTCTTTCATGTTGAGTCATTAGTGGAAAAATTACTTCAGCAACTTGCTAGCAAGCAAACTGTAATTGTCAATGTGTATGATACTACAAATCAAACCCATCCAATTTCCATGTACGGCTCAAATCTATCAGGGGATGTGTTCTATCATGTCAGCACTCTTAACTTTGGAGACCCTTTCAGGAAACATGAGATGCACTGCAGGTTCAAACAGAAACCACCGTGGCCATGGCTGGCAATAACTACTTCAATTGGCATCCTTGTTATTGCACTCCTTGTTGGACATATTTTCCATGCTACTGTGAATCGAATTGCAAAAGTAGAAGATGATTACCGTGAGATGATGGAGCTTAAAAAACGGGCTGAGGCAGCAGATGTTGCAAAATCCCAGTTTCTCGCTACTGTTTCCCATGAGATCAGAACACCAATGAATGGTGTTTTAGGGATGTTGCATATGCTTATGGATACAGATCTAGATGTAACCCAACAGGAATATGTCAGAACGGCACAGGAAAGTGGAAAAGCTCTGGTGTCACTTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATTTGGTAAGCTAGAGCTTGAGGCAGTGCTCTTTGACATACGGGCAATTTTGGATGATGTATTGTCACTATTTTCTGAGAAGTCCCAAGGAAAAGGAGTAGAGTTGGCAGTTTATGTGTCAGATCAGGTTCCTGAATTGCTAATAGGTGATCCAGGAAGGTTTCGACAAATAATTACAAATCTCGTGGGTAACTCAATTAAGTTCACAGACAAAGGGCATATTTTTGTCACTATCCATCTTGTTGAGGAGGTTGTACATTCAATAGAGGTTGACAAAGAAAAAGAATCAAATTCAGATAATACCTTGAGTGGGTTCCCTGTTTCTGATAGTCGCCGGAGCTGGAAAGAATTCAAGGCTTTCAGTCAAGAAGGACCCCTTGGTTCTTTCTCATCCTCCTCCAGTGACCTCATCAATTTGATTGTGTCTGTTGAGGATACAGGAGAAGGTATTCCTCTAGAAGCCCAGCCCCTCATCTTCACTCCATTCATGCAGGTAGGTTCATCCATCTCCAGAAAACATGGGGGAACAGGTATTGGCCTAAGCATTAGCAAGTGTTTGGTTGGCCTCATGAATGGTGAAGTTGGATTTGTAAGCATACCCAAGATTGGATCCACTTTCACTTTTACTGCTGTCTTCACCAATGGACTCCCCAGTTCAAATGAGTGTAAAATTCAGCAAATCAGCAACCAACCTCAACCTGCCTCTTCAGCATTTGAGGGGATGACTGCATTGGTTATTGACCCAAGATCCGTTCGAGCAAAAGTGTCTAGATATCACATCCAACGGCTTGGCATTCATGTTGAAATTGTTTCAGATTTAAACCAAGGTTTGTCAACCATAAGCAATGGGAATATAGTTATCAATATGATCCTGATTGAGCAGGAGGTCTGGGACAGAGATTCAGGCATGTCATCTCACTTTGTCAATAACACAAGGAAAGTTGACAGTGGGGTTCCTCCACAGCTGTTTATTCTTGTTAATTCTAGTAGTTCTTTCAAAGCAAGTAGCGTAATCCCAGGTGTTAATAATCCTACTGTCATAACAAAACCTCTGAGAGCAAGCATGCTTGCTGCCTCACTGCAAAGAGCCATGGGTTTTACGAACAAGGGCACTTCTTCAAATAGGGACCTCCAAAGCTTGTCTCTTCGCCAACTTCTTCTTGGGAGGAAGATTCTAATTGTAGATGACAATAGTGTGAACCTTGCAGTAGCTGCTGGTGCTTTGAAAAAATATGGAGCAGATGTGGTTTGTGTTAGCAGTGGAAAAGGTGCCATCTCTTCACTGAAGCCACCCCATCAATTTGATGCCTGTTTCATGGATATTCAAATGCCAGAAATGGATGGTTTTGAAGCTACGAAGAGAATTAGAGAGATGGAACATAATGTGAACAGAGAAGTGTCTATGGACTGGCATGTACCCATTTTAGCCATGACTGCAGATGTGATCCAAGCTACACATGAGGAATGCCTAAGGTGTGGCATGGATGGATATGTTTCAAAACCATTTGAAGCTGAACAGCTTTATAGAGAAGTTTCTCGGTTTTTCCAGTCATCTTGA 3075 0.4254 MSLFHVVGFSLKVGHLLLVLCCWVVSVVYLNRFISSGITDTKIGFLGDGGKMWLKWWEKISGHGYKIHQQYYQYIWSKKVKKALWRKLLLTWVVGWTIVSLWIFFCMSLQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPVHKDDYAPEALEPSPIQEEYAPVIFAQDTIAHVISVDMLSGKEDRGNVLRARESGKGVLTAPFRLLKTNSLGVILTFAVYKRDLPSNATPNERIQATNGYLGGVFHVESLVEKLLQQLASKQTVIVNVYDTTNQTHPISMYGSNLSGDVFYHVSTLNFGDPFRKHEMHCRFKQKPPWPWLAITTSIGILVIALLVGHIFHATVNRIAKVEDDYREMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRAILDDVLSLFSEKSQGKGVELAVYVSDQVPELLIGDPGRFRQIITNLVGNSIKFTDKGHIFVTIHLVEEVVHSIEVDKEKESNSDNTLSGFPVSDSRRSWKEFKAFSQEGPLGSFSSSSSDLINLIVSVEDTGEGIPLEAQPLIFTPFMQVGSSISRKHGGTGIGLSISKCLVGLMNGEVGFVSIPKIGSTFTFTAVFTNGLPSSNECKIQQISNQPQPASSAFEGMTALVIDPRSVRAKVSRYHIQRLGIHVEIVSDLNQGLSTISNGNIVINMILIEQEVWDRDSGMSSHFVNNTRKVDSGVPPQLFILVNSSSSFKASSVIPGVNNPTVITKPLRASMLAASLQRAMGFTNKGTSSNRDLQSLSLRQLLLGRKILIVDDNSVNLAVAAGALKKYGADVVCVSSGKGAISSLKPPHQFDACFMDIQMPEMDGFEATKRIREMEHNVNREVSMDWHVPILAMTADVIQATHEECLRCGMDGYVSKPFEAEQLYREVSRFFQSS. 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05905 1024 ProSiteProfiles Response regulatory domain profile. 896 1021 IPR001789 GO:0000160
Seca11g05905 1024 FunFam Histidine kinase 4 415 506 - -
Seca11g05905 1024 SMART HisKA_10 443 508 IPR003661 GO:0000155|GO:0007165
Seca11g05905 1024 SUPERFAMILY CheY-like 744 872 IPR011006 -
Seca11g05905 1024 CDD HATPase_EvgS-ArcB-TorS-like 560 718 - -
Seca11g05905 1024 SMART REC_2 895 1017 IPR001789 GO:0000160
Seca11g05905 1024 SUPERFAMILY CheY-like 894 1021 IPR011006 -
Seca11g05905 1024 CDD HisKA 443 504 IPR003661 GO:0000155|GO:0007165
Seca11g05905 1024 PANTHER TWO-COMPONENT HISTIDINE KINASE 99 1014 - -
Seca11g05905 1024 FunFam Histidine kinase 4 160 389 - -
Seca11g05905 1024 ProSiteProfiles Histidine kinase domain profile. 450 720 IPR005467 -
Seca11g05905 1024 PRINTS Bacterial sensor protein C-terminal signature 663 673 IPR004358 GO:0016310|GO:0016772
Seca11g05905 1024 PRINTS Bacterial sensor protein C-terminal signature 645 659 IPR004358 GO:0016310|GO:0016772
Seca11g05905 1024 PRINTS Bacterial sensor protein C-terminal signature 680 698 IPR004358 GO:0016310|GO:0016772
Seca11g05905 1024 CDD PRTases_typeI 846 924 IPR000836 -
Seca11g05905 1024 ProSiteProfiles CHASE domain profile. 156 382 IPR006189 -
Seca11g05905 1024 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 428 509 IPR036097 GO:0000155|GO:0007165
Seca11g05905 1024 SMART HKATPase_4 555 720 IPR003594 -
Seca11g05905 1024 Pfam CHASE domain 159 355 IPR006189 -
Seca11g05905 1024 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 497 715 IPR036890 -
Seca11g05905 1024 Gene3D - 107 159 - -
Seca11g05905 1024 ProSiteProfiles Response regulatory domain profile. 748 870 IPR001789 GO:0000160
Seca11g05905 1024 Gene3D - 411 506 - -
Seca11g05905 1024 Gene3D - 507 720 IPR036890 -
Seca11g05905 1024 Pfam Response regulator receiver domain 897 1016 IPR001789 GO:0000160
Seca11g05905 1024 SMART CHASE_2 156 357 IPR006189 -
Seca11g05905 1024 Gene3D CHASE domain 160 389 IPR042240 -
Seca11g05905 1024 CDD REC_hyHK_CKI1_RcsC-like 897 1017 - -
Seca11g05905 1024 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 555 718 IPR003594 -
Seca11g05905 1024 Pfam His Kinase A (phospho-acceptor) domain 443 506 IPR003661 GO:0000155|GO:0007165
Seca11g05905 1024 Gene3D - 892 1024 - -
Seca11g05905 1024 Coils Coil 420 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05905 Seca-Chr11 159339140 159344956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05905 1 1023 Miscellaneous Gene Families AT1G27320 68.541 0.0 1417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca11g05905 CHASE 7.7e-37 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05905 K14489 - gmx:100801546 1770.36