Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05898 ATGGAGTGGAATGCAAAATCCCCCTCACAATGGGACATGGAGTACCTATTATTCTTCAATGCAAAAGCAACAGAAAATCCAAAATTACAACCACCAAACAGGAGTGAAGTGAACAGGGAAATCAATGTCAGGTTGTTTGATACATCTGGTGGCAGTGCTTGTTCTGGGTCTGAGCTAATAGATGCTTCTTCATCAAGGAGCTCAAAATCAGCTTCCATCAGTTCATCATCAAATAAGGATAGCAAAACATCTATAATTACTTTTGAAAGTTCCCAAGATGATTCCAGTGCTAAAAAAGAATTATCTAAAGAGGAGCCAGTTGAAACTTCTCATGCACCAGAGCTCACTCTAAAGCTTGGTAAAAGGTTGTACTTTGAGGATGTGTGTCCAGGAAGTGATTCCAGGAACCTATCTTTCTCTGGGGCTCCCACTTTATCTTTAAATACTGGAAAGAAATGTAAGTCCAATGGTCAGCGCATACAATATCCACGATGCCAGGTTGAAGGCTGTGGCCTTGACCTTTCATCAGCTAAAGATTACCATCGCAAACATAGAGTTTGTGACAATCATTCCAAATCCCCTAAGGTGATTATAGCTGGTTTGGAACGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGGACTGTTAGAGTTTGATGAAAAAAAGAGAAGCTGCAGACGACGTCTTTCAGATCACAATGCAAGGCGCCGTAAACCCCTTCCTGAAGCTGTCGAATTAAGTCAATCAGCTTTGTCTTCCTCACAATGTGGTGGGAGGCAACGGACCAGTCCTTTCTCTTATTCCAGGACTGCTACAAATTTAGCCTGGCAAGGTTTACATAGCAGCAAGCTCCCCCAGACAAAAGATTTTCTCTTGAAACCTGCAAAAGCCAATAATGAGATACCAAGTATTGTCACTATGCTTTCTGGTGATTCCAACGTCCCTTTTACATCCAAAGGTGTTGCAACCAAGAGTACTAATCCAGGTTGTTTCACATCTTTCATCATAAAACTTTCTGTTGCAGATATAGAAGACTCCATCACCTCCTCTGATCCAAATGCTACACAAGATTTTCACCGTGCTCTCTCTCTTCTGTCAAACAATTCATGGGGTTCATATGAGACTAAATCCATTTCTCTAGAACACTCCAATCACACAACCAGTACCTCTCAGCCCATAATACATACAACGGGTCAGCGCTTTCCTCCTACTCCATCTGAATATTGGCATAGTGATCAACAAGTGAATTCCGGCACATGGATCTCATACTCAAATTGTGATGATAGTAATCGCTTTCATGAATTTCAACTGTTCAGAGAACCTTATGAGTCTGGATTTCCTTATGACCAGTTGGATTAA 1359 0.415 MEWNAKSPSQWDMEYLLFFNAKATENPKLQPPNRSEVNREINVRLFDTSGGSACSGSELIDASSSRSSKSASISSSSNKDSKTSIITFESSQDDSSAKKELSKEEPVETSHAPELTLKLGKRLYFEDVCPGSDSRNLSFSGAPTLSLNTGKKCKSNGQRIQYPRCQVEGCGLDLSSAKDYHRKHRVCDNHSKSPKVIIAGLERRFCQQCSRFHGLLEFDEKKRSCRRRLSDHNARRRKPLPEAVELSQSALSSSQCGGRQRTSPFSYSRTATNLAWQGLHSSKLPQTKDFLLKPAKANNEIPSIVTMLSGDSNVPFTSKGVATKSTNPGCFTSFIIKLSVADIEDSITSSDPNATQDFHRALSLLSNNSWGSYETKSISLEHSNHTTSTSQPIIHTTGQRFPPTPSEYWHSDQQVNSGTWISYSNCDDSNRFHEFQLFREPYESGFPYDQLD. 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05898 452 ProSiteProfiles Zinc finger SBP-type profile. 162 239 IPR004333 GO:0003677
Seca11g05898 452 MobiDBLite consensus disorder prediction 48 92 - -
Seca11g05898 452 Gene3D - 156 226 IPR036893 GO:0003677|GO:0005634
Seca11g05898 452 MobiDBLite consensus disorder prediction 246 264 - -
Seca11g05898 452 MobiDBLite consensus disorder prediction 47 113 - -
Seca11g05898 452 FunFam Squamosa promoter-binding-like protein 14 156 226 - -
Seca11g05898 452 MobiDBLite consensus disorder prediction 93 111 - -
Seca11g05898 452 SUPERFAMILY SBT domain 163 244 IPR036893 GO:0003677|GO:0005634
Seca11g05898 452 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 63 366 IPR044817 GO:0003677
Seca11g05898 452 MobiDBLite consensus disorder prediction 229 264 - -
Seca11g05898 452 Pfam SBP domain 165 238 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05898 Seca-Chr11 159284490 159287347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05898 1 418 SBP-box Gene Family AT5G43270 38.161 8.76e-62 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca11g05898 SBP 8.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05898 - - gmx:100796013 525.013