Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05893 ATGGACATCACTTGGCCTCCAAGGTACTACACCTGCACCTTTTGCGGAAGGGAGTTCCGTTCAGAACAAGCTCTTGGTGGCCACATGAACGTCCACCGTCGTGACCGTGCTCGCCTCCACCACCAACCACACTACCCTCCTTCACCCATTCCCACATTACCATCATTCATTAACATCCCACTTCAGGAGCTTGTTGCAAATGGTGTCTTGTGCTTTCTCTACCATTTGGCAAGCCCTAATGCTCCTCCATTCCCACTATTACTCTGA 267 0.5094 MDITWPPRYYTCTFCGREFRSEQALGGHMNVHRRDRARLHHQPHYPPSPIPTLPSFINIPLQELVANGVLCFLYHLASPNAPPFPLLL. 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05893 88 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 37 IPR013087 -
Seca11g05893 88 Pfam C2H2-type zinc finger 9 34 - -
Seca11g05893 88 SMART c2h2final6 10 32 IPR013087 -
Seca11g05893 88 Gene3D Classic Zinc Finger 7 45 - -
Seca11g05893 88 ProSitePatterns Zinc finger C2H2 type domain signature. 12 32 IPR013087 -
Seca11g05893 88 PANTHER OS07G0101800 PROTEIN 3 51 - -
Seca11g05893 88 SUPERFAMILY beta-beta-alpha zinc fingers 7 37 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05893 Seca-Chr11 159261231 159261497 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05893 5 81 C2H2 Transcription Factor Family AT5G06070 49.351 4.22e-21 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca11g05893 zf-C2H2_6 1.3e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05893 - - cam:101504981 127.102