LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g05882	ATGTTTTTCAATCAGTACATCCTTGAAACGAGTGGGCTTCCACAAGAGCACGAGCAATTGAAGCAACTCAGAGAGAAAACCGTGCAGAAGTACGGGGACATGAGTGTGATGAATGTGCCTGTGGATGAAGCACAGTTCATATCTATTCTTCTAAAAGTGATGAATGCGAAGAAAACGCTTGAAATTGGAGTCTTCACTGGTTATTCTCTTCTTGCTACCGCTCTTGCTCTACCTCCTGATGGCAAGGTAACGGCAATTGATGTGGATAGAGAAACGTACGAGACTGGATTGCCCTTCATTCAGAAGGCAGGAGTCGAGCACAAAATAGACTTTATCCATGGGGATGCATTTTCAGCCATCAATGCTCTTATTGATGGAAAACAGGAAGAATCATTTGATTATGTATTTGTGGATGCTGTGAAGGAAGATTACATAAAGTATCACGAGCCATTACTGAAATTGGTGAAGAAGGGTGGTTTAATTGCATATGACAACACCTTATGGCTTGGTTCGGTGGCCATGTCTGAGGACGATATTGAAATGACAGATATTTTGAGGCATAACAGAAAGCCACTACGTGAATTCAACACCTTCATAGCAAATGATACTCGTGTAGAATCAATAATCCTTTCTGTTGGGGACGGTGTAACCCTCTGCCGACGTCTCTAA	669	0.423	MFFNQYILETSGLPQEHEQLKQLREKTVQKYGDMSVMNVPVDEAQFISILLKVMNAKKTLEIGVFTGYSLLATALALPPDGKVTAIDVDRETYETGLPFIQKAGVEHKIDFIHGDAFSAINALIDGKQEESFDYVFVDAVKEDYIKYHEPLLKLVKKGGLIAYDNTLWLGSVAMSEDDIEMTDILRHNRKPLREFNTFIANDTRVESIILSVGDGVTLCRRL.	223

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g05882	222	ProSiteProfiles	SAM-dependent O-methyltransferase class I-type profile.	1	222	IPR002935	GO:0008171
	Seca11g05882	222	Gene3D	Vaccinia Virus protein VP39	2	222	IPR029063	-
	Seca11g05882	222	PANTHER	O-METHYLTRANSFERASE-RELATED	4	222	-	-
	Seca11g05882	222	Pfam	O-methyltransferase	15	222	IPR002935	GO:0008171
	Seca11g05882	222	CDD	AdoMet_MTases	60	163	-	-
	Seca11g05882	222	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	5	221	IPR029063	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g05882	Seca-Chr11	159089877	159094146	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g05882	3	222	Monolignol Biosynthesis Gene Families	AT1G67990	54.545	4.83e-86	253

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g05882	K00588		K13272	gmx:100813350	327.791