Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05880 ATGGCTCTCGGGTTCGGGTCCTCCGAGGATGTCTCTGGTTTCAAGTTCTTGTTCCTCCTTGCGGTCACGTATGGCCTCATGTCGATGCTCACCTACTCTGTCATCCACATGAAGTTCATCAACCCACTCCAAAACGATGCGCCTCTCGATCGATTTTCCGAAGGCAGAGCCGTCCAACACGTTCGAGTGTTGTCTCAAGAGATCGATGGTCGTCAAGAAGGGCGTCCTGGATTGAAAAAAGCTGCTCAATATATCAAGGGTCAATTGGAAGTAATAAAGGAGCGAGGTAGCTCCAATGTCAGAATTGAGATTGAGGAGAACACAGTTAGTGGCTCCTTCAACATGCTATTTTTGGGTTACAACATAGCTCTGGTATACAGAAACCATACTAACATTATTATGAGGATATCATCTGTAGATTCCAAAGATACTGATCCATCAGTTTTAGTGAATGGACATTTTGATAGTCCCCTTGGTTCCCCGGGTGCTGGTGATTGTGGTTCGTGTGTTGCATCAATGATGGAAATTGCAAGGCTAATTGTGGACTCTGGTTGGGCTCCTCCCCGCCCTGTTATTTTCCTTTTTAATGGTGCTGAGGAACTTTTCATGTTGGGTTCACATGGGTTCATGAAGACACATAAATGGCGTGATACAATAGGAGCTTCTGTAAATGTTGAGGCATCTGGGAGTGGGGGACCTGATTTAGTTTGCCAATCTGGACCCACTTCTTGGCCTTCTAATGTCTATGCAGAAGCAGCAATGTACCCCATGGCTAATAGTGCAGCTCAGGATGTTTTTCCTATTATTCCTGGAGATACAGATTACCGAATATTTTCCCAAGACTATGGGAATATTCCTGGGCTTGACATTATCTTTCTCCTCGGTGGTTATTTTTACCATACCTCCTATGATACAGTAGAGCAACTATTACCTGGAAGCATCCAAGCACGCGGAGAGAATTTGTTCAGCATAATCAAGGCTTTTACTAATTCTTCTAAGTTACAAAATGCCTACCAAACAAATTATAGTGAAGTTACTGCTAGCTTATACAAGGATGAGGGGGCTGTTTTCTTTGATTATCTCTCATGGTTTATGATATTTTATTCCAGAAGGGTAGCTAAAATTCTTCACAGTATTCCTATCTTCTTCTTCCTTGTTATGTCCTTTGTGCATGGCAGGTCGCATTCTTGGTTGGCAACTTTTTGTGATTTTATAAAAGGATTTCTGTTCCATGCAGTTGGGATTATATTGGCAATTGTTGTGCCTGTTGTGTTTTCTTTCCTGAGATTACTGTTCTCTTCTCAGACAATGAATTGGTTTGCTCATCCATACTTGGCTTTCATGATGTTTATACCCTGCTCGCTCGTGGGTCTTTTAATTCCAAGAATTATCTGGAGATACTTTCCTCTTTCTCAAGATGTTTCAGTTGTCAAGACATCAAAAGAGGCACTATCTGATGAAGCAAGGTTCTGGGGAGCATTTGGGTTCTATGCTGTATTAACTTTGGCTTATCTTGTATCTGGGTTGAGTGGAGGTTTCGTGACATTTTTTGTGTCTGTTTCCATGCTTCCTGCTTGGATATCCTTCTGCTTATCAGTCAAATCATTTGGACGACAGTCACTCAGGTCAACAATGTTTTACATGTTGCCTCTAGTTCCATGCCTTGCATATGCTGTTTATTTTGGTGGCTTTCTTGCCCAGTTTCTGATAGAGAAGATGGGCATGATGGGTTCTCTTCCTCTACCATATGGGCACTATGTTCCTGACGTTATTGTGGCTGCATTAATTGGTCTTGTAACTGGTTGGTGCGTGGGCCCTATAATTCCCATTTGTGGTCGTTGGTTAGCCAGGTCATCCATCTTGCAATTTCTGCTGCATCTTAGTGTGTTTGCTTTGGCGTTATCATCTCAGTTCTTCCCTTACACCATGTATGCACCTAAGAGAGTTGTTTTTCAGCATACTATCCATACTAAAGGCTCAAGTCAGATTGTGGAATCCACTTATGATTTTTCTGTAACTGATTCCAATTCTTTACTATTCCTTTTCAAATACTCACCTGAAGTGGCAAAGGAATTGAATGTTACTTCAGAGTTTTCATTTGAATCTGCATCACTGTCTAAACGCCAAGATTGGATGGCACTTTTTCCAGTTTCTTTTCTCTTTTCAAATAGTCTGAAGTTCCCTGTAAAAGGGGATGACGTTTTGAAGCAGTATGAATTCTTTCCCAAATTGTCTGTTCAAAATCCGTCTTTAAATTCTGAAAAGGGACCAAGAAGAGTTCACTTGGAGTTTTATTTAGGTTCCTTAGAGGAGGTCTGGGTCGCTGTTCTTAACATTACTGGTCCTTTATCCAGTTGGTCATTTGCAGACAATGTACTTTCAGGAACTGAAACTTATGGCGGCGGTCCACCATCATATATATGTAGGCTTAGTGGACCCAGTGATGGGAATTGGACCTTCTGGTTAGAGGTAAAATTTGATGATGTATTAACAGTGAAGTACTCAAGAGAGCCTGACAATCCCACCAAATCCTGCAAGGCTCGAGGTGCTGACCTTAGAGTTCATTTCAAGAACACTAGGGAAACTGCCTTTGCCATCAGAAAGTTTCCCTTGGCAAAGGCTAAAAGATATTTGGAGGATGTTCTCGCTCACAAACAGGCCATTCCATTCAGACGTTTCTGTCGTGGTGTTGGGAGGACAGCGCAGGCAAAGAACAGACATTCTAATGGACAAGGAAGGTGGCCTGTCAAATCAGCTAGATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAAGTAAAAGGTTTGGATGTTGATGCTCTATACATTTCTCATATCCAAGTCAATCAGGCTCAGAAGCAAAGGCGCCGAACATACCGAGCCCATGGACGAATCAACCCTTACATGTCATCTCCCTGCCACATAGAGTTGATATTATCTGAAAAGGAAGAACCAGTCAAGAAGGAGCCCGAGACTCAGTTGGCAACCAGCAGCAAGAAGAAGTCCCAAGCTCTTCGAAGTGGTGCTTCATCTTAA 3042 0.4237 MALGFGSSEDVSGFKFLFLLAVTYGLMSMLTYSVIHMKFINPLQNDAPLDRFSEGRAVQHVRVLSQEIDGRQEGRPGLKKAAQYIKGQLEVIKERGSSNVRIEIEENTVSGSFNMLFLGYNIALVYRNHTNIIMRISSVDSKDTDPSVLVNGHFDSPLGSPGAGDCGSCVASMMEIARLIVDSGWAPPRPVIFLFNGAEELFMLGSHGFMKTHKWRDTIGASVNVEASGSGGPDLVCQSGPTSWPSNVYAEAAMYPMANSAAQDVFPIIPGDTDYRIFSQDYGNIPGLDIIFLLGGYFYHTSYDTVEQLLPGSIQARGENLFSIIKAFTNSSKLQNAYQTNYSEVTASLYKDEGAVFFDYLSWFMIFYSRRVAKILHSIPIFFFLVMSFVHGRSHSWLATFCDFIKGFLFHAVGIILAIVVPVVFSFLRLLFSSQTMNWFAHPYLAFMMFIPCSLVGLLIPRIIWRYFPLSQDVSVVKTSKEALSDEARFWGAFGFYAVLTLAYLVSGLSGGFVTFFVSVSMLPAWISFCLSVKSFGRQSLRSTMFYMLPLVPCLAYAVYFGGFLAQFLIEKMGMMGSLPLPYGHYVPDVIVAALIGLVTGWCVGPIIPICGRWLARSSILQFLLHLSVFALALSSQFFPYTMYAPKRVVFQHTIHTKGSSQIVESTYDFSVTDSNSLLFLFKYSPEVAKELNVTSEFSFESASLSKRQDWMALFPVSFLFSNSLKFPVKGDDVLKQYEFFPKLSVQNPSLNSEKGPRRVHLEFYLGSLEEVWVAVLNITGPLSSWSFADNVLSGTETYGGGPPSYICRLSGPSDGNWTFWLEVKFDDVLTVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKFPLAKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSARFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSSKKKSQALRSGASS. 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05880 1013 PANTHER METALLOPEPTIDASE M28 FAMILY MEMBER 36 730 IPR045175 GO:0006508|GO:0008235
Seca11g05880 1013 NCBIfam 50S ribosomal protein L22 834 984 IPR005721 GO:0003735|GO:0006412|GO:0015934
Seca11g05880 1013 Gene3D Zn peptidases 44 346 - -
Seca11g05880 1013 Pfam Peptidase family M28 131 321 IPR007484 -
Seca11g05880 1013 FunFam Endoplasmic reticulum metallopeptidase 1 46 344 - -
Seca11g05880 1013 CDD M28_Fxna_like 49 368 - -
Seca11g05880 1013 Hamap 50S ribosomal protein L22 [rplV]. 830 984 IPR005721 GO:0003735|GO:0006412|GO:0015934
Seca11g05880 1013 SUPERFAMILY Ribosomal protein L22 832 984 IPR036394 GO:0003735|GO:0005840|GO:0006412
Seca11g05880 1013 FunFam 60S ribosomal protein L17 831 1006 - -
Seca11g05880 1013 CDD Ribosomal_L22 845 981 IPR001063 GO:0003735|GO:0005840|GO:0006412
Seca11g05880 1013 Pfam Ribosomal protein L22p/L17e 847 982 IPR001063 GO:0003735|GO:0005840|GO:0006412
Seca11g05880 1013 MobiDBLite consensus disorder prediction 998 1013 - -
Seca11g05880 1013 ProSitePatterns Ribosomal protein L22 signature. 957 981 IPR018260 GO:0003735|GO:0005840|GO:0006412
Seca11g05880 1013 SUPERFAMILY Zn-dependent exopeptidases 42 331 - -
Seca11g05880 1013 MobiDBLite consensus disorder prediction 984 1013 - -
Seca11g05880 1013 Gene3D Ribosomal protein L22/L17 831 1012 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05880 Seca-Chr11 159056083 159075475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05880 832 1013 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 87.912 3.34e-111 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05880 - - gmx:100796569 1496.49