LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g05873	ATGATGGATGTTGCGGAGGTTGAAGAAAATCTATTCGCTATTAGTGATGCCAAGTTACATGGACAAATGTGCAAGGCTCTTTCTATAATATATTGCAAAGTATTGTCAATATTTCCTTCTTTAGAAGCAGCTAGACCTAGGAGTAAAACTGGAATTCAGGCATTGTGTTCATTGCATGTAGCCTTAGAGAAAGCCAAGAGTGTTCTTCAACACTGCTCAGAGTGTAGTAAACTCTACTTGGCTGTTACTGGGGATTCCGTTCTTCTAAAATTTGAGAAGGCTAAATGTGCTCTTGAAGATAGTCTTAGACGAGTGGAAGATATTGTTCCACAATCTATTGGGTGTCAGGTTCAAGAGATTGTGAATGAATTTGAGAGTGTGGAATTTGCTCTTGACCCATCAGAGAAGCAAGTTGGTGATGATTTAATTGCATTGCTTCAGCAGGGGAGAAAGTTTAATGACTCTAGTGACAGTAATGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGGAATCACATCTTCAAGAGCAGCTCTTGCTGAAAGAAGAGCTCTCAAGAAACTTATAGACAGGGCTCGGGCTGAGGAAGACAAGCGGAAGGAATCAATTGTTACATATCTTTTACATCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTCTCAGATGACAATGATTCTCAGGGTTCTGCACCTTGTTCTCCCACTGTTCTAGGATCTATTGAGGATGGTATTCCTGGTGGTCAATGTCAAGCTTTTGACAGACAACTATCAAAACTTAGCTCCTTTAATTTCAAGCAAAATAATAATAGGGAATCGGGGCAGATGCCTGTTCCACCTGAAGAGTTAAGATGTCCAATATCTCTGCAGCTCATGTATGATCCGGTTATCATTGCTTCTGGCCAAACATATGAAAGGGTTTGCATAGAGAAATGGTTCAGTGATGGGCACAACAACTGCCCAAAGACCCAACAGAAACTTGAGCATCTTTGTTTGACTCCTAATTACTGTGTTAAGGGTCTTGTTGCTAGTTGGTGTGAACAAAATGGAGTTCCTGTTCCTGAAGGCCCTCCTGAATCTCTTGATCTTAACTACTGGAGATTGGTATTATCAGAGTCTGAATCTACAAATTCGAGATCTGTAAATAGTGTCAGCTCTTGCAAGTTGAAGGGTGTCAAAGTGGTTCCTTTAGAGGAGAGTGGTATCTCAGAGGAATCTGGGGAAAATGGAACTGAAAGTGTGTCTGCACAAGAGGAAGACACTGAGCAGTATTTTAGTTTTCTGAAAGTCTTGACTGAGGGGGACAATTGGGAGAGGAAATGTGAAGTGGTAGAACAGTTAAGGCTGTTTCTGAGGGATGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGGTTTGTTGAAGCACTTCTACAGTTTTTACAATCAGCTGTGCATGAAGGAGATTTGATGGCTCAGGAAAGTGGAGCAATGGCTCTCTTCAACCTGGCTGTGAATAACAACAGGAATAAGGAAATCATGTTATCAGCTGGAGTATTATCATTGTTGGAGGAAATGATTTCTAACACTAGTTCCTATGGTTGTGCAAGCGCTCTATATCTGAATCTCTCTTGCCTAGAAGAAGCCAAACCTATGATTGGCATGAGTAATGCTGTACAGTTCCTCGTCCAGCTTCTTCAATCTGACTCTGATGGTCAATGCATGCAAGATTCTCTTCATGCTCTCTATAATCTTTCTACTGTGCCCTCCAATATCCCATACCTCCTTTCATCTGGCATAATTAATGGTCTACAATCCCTTCTTGTAGGCCAGGGTGATTGCGTGTGGACAGAAAAATGCATAGCTGTTTTGATAAATTTAGCCACTTCTCAAGTTGGAAGGGAGGAAATGGTATCAACTCCTGGACTCATCGGTGCATTGGCTTCGATATTGGACACCGGTGAGCTCCTAGTGCAGGAACAAGCTGTCTCTTGTCTCCTAATTTTGTGCAACAGAAGTGAGATATGTAGCGAGATGGTCCTGCAAGAAGGGGTTATACCTGCATTGGTATCAATATCAGTGAATGGGACTCCAAGAGGGAGGGAAAAAGCACAGAAACTTTTGATGCTGTTCCGAGAGCAGCGACAACGAGACCATTCACCAGTTAAGACACATCAGTGCCCACCTGAAACTAGTGATTTGTCTGTGCCGCCTGGTGAAATGAAACCTCTATGTAAATCCATGTCTAGAAGAAAGACTGGGAAAGCTTTTGGCTTTTTCTGGAAAAGCAAGAGCTATTCTATACACCAGTGTTAG	2301	0.4198	MMDVAEVEENLFAISDAKLHGQMCKALSIIYCKVLSIFPSLEAARPRSKTGIQALCSLHVALEKAKSVLQHCSECSKLYLAVTGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFESVEFALDPSEKQVGDDLIALLQQGRKFNDSSDSNELESFHQAATRLGITSSRAALAERRALKKLIDRARAEEDKRKESIVTYLLHLMRKYSKLFRSEFSDDNDSQGSAPCSPTVLGSIEDGIPGGQCQAFDRQLSKLSSFNFKQNNNRESGQMPVPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQKLEHLCLTPNYCVKGLVASWCEQNGVPVPEGPPESLDLNYWRLVLSESESTNSRSVNSVSSCKLKGVKVVPLEESGISEESGENGTESVSAQEEDTEQYFSFLKVLTEGDNWERKCEVVEQLRLFLRDDEEARIFMGANGFVEALLQFLQSAVHEGDLMAQESGAMALFNLAVNNNRNKEIMLSAGVLSLLEEMISNTSSYGCASALYLNLSCLEEAKPMIGMSNAVQFLVQLLQSDSDGQCMQDSLHALYNLSTVPSNIPYLLSSGIINGLQSLLVGQGDCVWTEKCIAVLINLATSQVGREEMVSTPGLIGALASILDTGELLVQEQAVSCLLILCNRSEICSEMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFREQRQRDHSPVKTHQCPPETSDLSVPPGEMKPLCKSMSRRKTGKAFGFFWKSKSYSIHQC.	767

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g05873	766	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	467	513	IPR000225	GO:0005515
	Seca11g05873	766	FunFam	RING-type E3 ubiquitin transferase	280	354	-	-
	Seca11g05873	766	SUPERFAMILY	ARM repeat	429	708	IPR016024	-
	Seca11g05873	766	Gene3D	-	400	721	IPR011989	-
	Seca11g05873	766	SMART	arm_5	456	500	IPR000225	GO:0005515
	Seca11g05873	766	SMART	arm_5	541	582	IPR000225	GO:0005515
	Seca11g05873	766	Coils	Coil	176	196	-	-
	Seca11g05873	766	ProSiteProfiles	U-box domain profile.	280	354	IPR003613	GO:0004842\|GO:0016567
	Seca11g05873	766	SMART	Ubox_2	284	347	IPR003613	GO:0004842\|GO:0016567
	Seca11g05873	766	CDD	RING-Ubox_PUB	282	334	IPR045210	-
	Seca11g05873	766	Pfam	U-box domain	282	351	IPR003613	GO:0004842\|GO:0016567
	Seca11g05873	766	SUPERFAMILY	RING/U-box	272	357	-	-
	Seca11g05873	766	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	280	354	IPR013083	-
	Seca11g05873	766	MobiDBLite	consensus disorder prediction	711	734	-	-
	Seca11g05873	766	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	552	595	IPR000225	GO:0005515
	Seca11g05873	766	PANTHER	U BOX DOMAIN-CONTAINING	22	710	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g05873	Seca-Chr11	158961367	158966888	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g05873	2	765	U-box Gene Family	AT1G24330	67.224	0.0	1053

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g05873	-		-	gmx:100794099	1337.78