Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05867 ATGGCTGCTGGAAGACATGGCGGTTACCGCGAAAACGAGTTTAGGGACCGCGAGTCCAATTTGGATGTTTCGAGGCGCGGTCTCACGAATTCGAAAGAAGAGTATGATCGGGTTAGGAATGGTGGCCGTGATGTTGCGAGGGGTGGGAGCAGGGATTTGAGAGATAGGATTAGGGTGAGGCAGAAGGAGATTCGGGAAAGAGAAGCTGTCAGTAATGGCAATTACCGATCCTCTTCGAGTCGGAGTAACTCCGGAAGCAGTGGTGGACTTGGCCCTCGCCGGTGTGGTTTTTCTGCCAAGACTTTGGATAGAGAGCCTGGTGAGCTTTCCAGTGAGAGTGGGTCTGATGATGCTATTGAATCAGAGTCAGGGGTGAAAGATGATGAGGTTGCAATGTTTGAAGGAAACAGGACTCTGTCGCCACCACCACAGGAGAGGAAAAGGAAATTTTCACCCATAGTGTGGGATCAGGATGACAAGGAAGTGAAGGAGTCATCCAAAGTTAGGGTTTCCACTACATCAGTGACTGCTCTTCCTCCTCTGCCTCAGCTGCCAAAAGAAATGCGTCCTGCCGGGAACAGAGAAACTGAGACTCCTGAGTTGCGTGCAGCAGCTAAGGTTACCTTGTCCTCTCCTTCAAGTTTGCAGTCCTTGTCTCCAAAACAGACTTGGGGTAATGATCAGGAAGCTGAGCAGCCAGAAGAAGGTGAAGATTATGTTCCAACACGTAATATATCATCCTCAAGATGGGCAGCTGGAGATAACTCTCCTGGTGATGAGGGTGAAATCCTTGATGATGAGGAAATTCCTAAAAGGAGGAGGAGGCTGTCTCCTGAGTTGTTGGAGACTAGAGTGAGGAACAAGTTGTTGAGCCCGGATGAATCTAAAATAGAAAGTTCTGAAGGAGCTAGAGCCAAATCATCAGGATCTGAAGAAAGAGGAATTATCCATGGGAGAACATCCAGTGGTGATGATCATCCTGGTATTGAATCAGAGAATGATGACTATATGGAGGTTGATGCTCAGGGTATGAAAAGTGAAACCAGTGTTAGTCACTCAGATACAGAATCTGAAGATGAAGATGATAGGCGGGAGACTCCAGAACCTCCAGCTCCACCTCAAAGAACGGTCAACATGCTTCAGGGTTGTAGAAGTGTTGATGAGTTTGAGAGACTTAATAAGATAGATGAAGGAACATATGGTGTTGTATATAGGGCTAGAGATAAGAAGACTGGGGAAATTGTAGCATTGAAGAAGGTCAAGATGGAGAAGGAAAAAGAAGGCTTCCCACTGACTTCTCTTAGGGAAATAAACATTCTTCTTTCTTTTCACCACCCATCCATAGTTGATGTTAAGGAAGTAGTGGTAGGAAGTAGCCTTGATAGTATTTTCATGGTTATGGAATACATGGAACATGATCTTAAAGGATTAATGGAGGCAATGAAGCAACCATTTAGCCAGAGTGAAGTAAAGTGCTTAATGATCCAGCTTTTAAAAGGTGTGAAGTATCTTCATGACAACTGGGTGCTTCATAGGGATTTAAAGACTTCAAACCTGCTTCTAAATAATAGGGGTGAGCTAAAAATTTGTGATTTTGGGTTGGCTCGTCAGTATGGGAGTCCCTTGAAACCATATACGCACCTGGTGGTTACACTTTGGTACAGGGCACCTGAACTTCTTCTGGGGGCAAAACAGTATTCAACAGCTATTGACATGTGGTCTCTTGGTTGTATAATGGCTGAACTATTGGCTAAGGAACCACTATTTAATGGGAAAACGGAATTTGATCAACTTGACAAGATTTTCAGGATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCAAAATTACCTGGAGTCAAGGTCAACTTTGTCAAGCACCAGCTTCCAACTTTGGGTGGTTCTGGTATAATCTCCTCCGTAAAAAGTTTCCTGCCACATCATTCACTGGATCTCCAGTTCTTTCTGATTCGGGATTTGATTTGTTGA 1995 0.4466 MAAGRHGGYRENEFRDRESNLDVSRRGLTNSKEEYDRVRNGGRDVARGGSRDLRDRIRVRQKEIREREAVSNGNYRSSSSRSNSGSSGGLGPRRCGFSAKTLDREPGELSSESGSDDAIESESGVKDDEVAMFEGNRTLSPPPQERKRKFSPIVWDQDDKEVKESSKVRVSTTSVTALPPLPQLPKEMRPAGNRETETPELRAAAKVTLSSPSSLQSLSPKQTWGNDQEAEQPEEGEDYVPTRNISSSRWAAGDNSPGDEGEILDDEEIPKRRRRLSPELLETRVRNKLLSPDESKIESSEGARAKSSGSEERGIIHGRTSSGDDHPGIESENDDYMEVDAQGMKSETSVSHSDTESEDEDDRRETPEPPAPPQRTVNMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKTGEIVALKKVKMEKEKEGFPLTSLREINILLSFHHPSIVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMEAMKQPFSQSEVKCLMIQLLKGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGAKQYSTAIDMWSLGCIMAELLAKEPLFNGKTEFDQLDKIFRILGTPNETIWPGFSKLPGVKVNFVKHQLPTLGGSGIISSVKSFLPHHSLDLQFFLIRDLIC. 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05867 664 CDD STKc_CDC2L1 383 630 IPR045267 GO:0004674|GO:0005524|GO:0006468
Seca11g05867 664 SUPERFAMILY Protein kinase-like (PK-like) 381 628 IPR011009 -
Seca11g05867 664 Pfam Protein kinase domain 389 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05867 664 MobiDBLite consensus disorder prediction 265 341 - -
Seca11g05867 664 MobiDBLite consensus disorder prediction 1 377 - -
Seca11g05867 664 MobiDBLite consensus disorder prediction 8 70 - -
Seca11g05867 664 FunFam Cyclin-dependent kinase G-2 472 655 - -
Seca11g05867 664 Gene3D Transferase(Phosphotransferase) domain 1 472 656 - -
Seca11g05867 664 MobiDBLite consensus disorder prediction 71 89 - -
Seca11g05867 664 FunFam cyclin-dependent kinase G-2 isoform X1 374 471 - -
Seca11g05867 664 SMART serkin_6 389 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05867 664 MobiDBLite consensus disorder prediction 207 229 - -
Seca11g05867 664 MobiDBLite consensus disorder prediction 141 167 - -
Seca11g05867 664 ProSiteProfiles Protein kinase domain profile. 389 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05867 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 509 521 IPR008271 GO:0004672|GO:0006468
Seca11g05867 664 MobiDBLite consensus disorder prediction 351 369 - -
Seca11g05867 664 PANTHER CELL DIVISION PROTEIN KINASE 387 621 - -
Seca11g05867 664 MobiDBLite consensus disorder prediction 119 133 - -
Seca11g05867 664 Gene3D Phosphorylase Kinase; domain 1 374 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05867 Seca-Chr11 158865019 158872332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05867 380 664 Core Cell Cycle Gene Families AT5G10270 45.253 1.08e-86 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Seca11g05867 Pkinase 2.7e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05867 K08818 - gmx:100792524 958.362