Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05861 ATGGACTCAGATTCTGACTCCGATGGATCTCATGTCTCTGCAACTCCTCCAAGACAATCAAGTCCACCACCACCATTGCCCTCACCGCCACCACAACCACAACCACCTCTTCTATTTTCCAAAAAGCTTCAACGGAAAACCTGCAAGAGTCCCTCTTCTAAATCCACAATCAGAACCAAACCCTCAAAACCCAAACCACTCCCTTCCGAACCCTTGAAAAGCCCTTCAGAACCCGATCCAAACCAACAAGACCCTTTCTGCCTCCCTACCCTACCCTTCCAAATTCGGCGACCCTCTGATTGTGTTCCCGCGCCCCAGTCAATTGAAATTGAAACCCTCCCCGCTGGGTTCTTCTCCAAATCCGCTTCCTTCTCGAAGATTCGAAGACCCTTTCTCAATTTAGAACCTTCTGGAAACGAACCTGTTCTTAATTCCGCGTCCAGTTCGTGCCCCAAGGCTGAGAGCGGCGATGCTGGAAACTCTGGGAAGTCCCGGAAGAAGCATCCTAACCTCATAGGTGCTAGCTTGCCGATGCCAACTGCGAAGTTGCGAAAATGCGGTGGTGGCGGGGAAGGAAACTTTGTGAAGTTGAACATGAGTGGGAAGAGGAAGAAGTTTTTGAACAAAGGGTGGAAGAAAAAGGGGAAATTTGGTCGTTTTAAAAGGTACAAGAGAAGTAAAGGTGAATTGCAACGTGAAGGGGAGGATCAAGTGGAGCTTTTTGAGGAGGATGGCTTGGTTGTTGGAAGTGCAGAGCAAAAGAAGAAGCAAAAAGGGTGTTGTAAGACAAGAGAGATTGATTGCGAAGTGATGGAAGAGGCTGTGTCTGCAGCTCGAGTTGAGCATTCAGATGAGAGTTTGGTGAAGTTGTTGAAATTGATTTATGGTTATGATTCTTTTCGTGATGGGCAGCTTGAGGCAATCAAGATGGTTCTTGCTGGGAAGTCAACTATGCTTATTTTGCCGACTGGTGCAGGGAAATCGCTGTGCTATCAGTTGCCTGCTGTGATTTTGCCCGGGATTACACTGGTTGTTAGTCCTTTGGTAGCTTTGATGATTGATCAGCTAAGGCAATTGCCTCCTGTCATTAGGGGTGCTCTACTATGCAGCACTCGGGTGCTTTTTGTTTCACCAGAGCGGTTCCTGAACGAAGAGTTTCTGTCTACTATTTCTGCTATGTCAGCTGTCTCACTTGTTGTTATTGATGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCGTCTCTGCTTCATAAAAGGCTTAATGTAGGTTCTGTTCTTGCAATGACAGCAACTGCGACAACCACAACTTTAGATGCCATCATGTCTGCTCTAGATATTCCTTGCACAAATCTTATTCAGAAGGCACATTTAAGGGACAATTTGCGTTTATCAGTGTCTTCGGTGAAAAATAGGCAAGTTAAACGCTTCTATTTACTGCTTCAGCTTGTATACACTCCTTATCTGAACTTTGTTAAACTTATACATCTATACTTTGAACATTTTGAATATGATAGAATGAAAGACCTATTGGTTCTGATAAAGTCTTCTCCTTTTGCGGAAGTTCGAAGCATCATCATATACTGCAAATTTCAGTCTGAAACTGATATGATTAGCAGATACTTGAATGATAACAATATATTGGCAAAGAGTTATCATAGTGGTATCACTGCAAAGGAACGTAGCTATGTGCAGGAGTTGTTTAGTTCCAACAAAATCAGAGTGGTTGTTGCAACTGTGGCATTTGGCATGGGACTAGATAAAAGAGATGTTGGAGCAGTAATTCATTACAGTTTGCCTGAAAGTCTGGAAGAGTATGTTCAGGAGATAGGACGTGCTGGAAGGGATGGGAGGTTGTCCTATTGTCACCTATTTTATGACGATGAGACATACTTCAAACTTCGTAGTCTAATGCACAGTGAAGGAGTAGATGAATATGCAGTGAATAAATTTCTGCACGAAGTGTTTCCTGCTGATAAAAGCTCCTGTGGGAAAATCTGTTCATTGATCAAAGAATCTGCTTCACGCAGGTTTGATATGAAAGAAGAGGTCCTCTACTCAATACTATAA 2097 0.4344 MDSDSDSDGSHVSATPPRQSSPPPPLPSPPPQPQPPLLFSKKLQRKTCKSPSSKSTIRTKPSKPKPLPSEPLKSPSEPDPNQQDPFCLPTLPFQIRRPSDCVPAPQSIEIETLPAGFFSKSASFSKIRRPFLNLEPSGNEPVLNSASSSCPKAESGDAGNSGKSRKKHPNLIGASLPMPTAKLRKCGGGGEGNFVKLNMSGKRKKFLNKGWKKKGKFGRFKRYKRSKGELQREGEDQVELFEEDGLVVGSAEQKKKQKGCCKTREIDCEVMEEAVSAARVEHSDESLVKLLKLIYGYDSFRDGQLEAIKMVLAGKSTMLILPTGAGKSLCYQLPAVILPGITLVVSPLVALMIDQLRQLPPVIRGALLCSTRVLFVSPERFLNEEFLSTISAMSAVSLVVIDEAHCISEWSHNFRPSFMRLRASLLHKRLNVGSVLAMTATATTTTLDAIMSALDIPCTNLIQKAHLRDNLRLSVSSVKNRQVKRFYLLLQLVYTPYLNFVKLIHLYFEHFEYDRMKDLLVLIKSSPFAEVRSIIIYCKFQSETDMISRYLNDNNILAKSYHSGITAKERSYVQELFSSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDETYFKLRSLMHSEGVDEYAVNKFLHEVFPADKSSCGKICSLIKESASRRFDMKEEVLYSIL. 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05861 698 NCBIfam RecQ family ATP-dependent DNA helicase 290 660 IPR004589 GO:0004386|GO:0006310
Seca11g05861 698 PANTHER DNA HELICASE RECQ FAMILY MEMBER 276 672 - -
Seca11g05861 698 Pfam Helicase conserved C-terminal domain 530 625 IPR001650 -
Seca11g05861 698 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 308 640 IPR027417 -
Seca11g05861 698 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 515 672 IPR001650 -
Seca11g05861 698 MobiDBLite consensus disorder prediction 138 155 - -
Seca11g05861 698 Gene3D - 257 369 IPR027417 -
Seca11g05861 698 Pfam DEAD/DEAH box helicase 302 446 IPR011545 GO:0003676|GO:0005524
Seca11g05861 698 CDD SF2_C_RecQ 518 635 - -
Seca11g05861 698 MobiDBLite consensus disorder prediction 17 37 - -
Seca11g05861 698 FunFam ATP-dependent DNA helicase Q-like 5 468 693 - -
Seca11g05861 698 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 397 406 IPR002464 -
Seca11g05861 698 SMART helicmild6 545 626 IPR001650 -
Seca11g05861 698 SMART ultradead3 296 476 IPR014001 -
Seca11g05861 698 MobiDBLite consensus disorder prediction 135 175 - -
Seca11g05861 698 Gene3D - 370 459 IPR027417 -
Seca11g05861 698 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 308 460 IPR014001 -
Seca11g05861 698 MobiDBLite consensus disorder prediction 1 92 - -
Seca11g05861 698 Gene3D - 468 685 IPR027417 -
Seca11g05861 698 MobiDBLite consensus disorder prediction 45 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05861 Seca-Chr11 158799136 158802911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05861 509 658 Eukaryotic Initiation Factors Gene Family AT3G19760 28.289 2.36e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05861 K10730 - gmx:100811214 769.229