Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05843 ATGATACATAGGTCTCTTCTCTCTGAAAATATGGATAATGGTTGTTTCCCTTCTCCACGCCTTGATGCTTTTCCAGCTGGTTTGCGAGTTCTTGTTGTTGATGATGATCCAACATGGCTGAGGATCCTTGAAAAGATGCTTAAGAAATGCTTTTATGAAGTGACTACATGTTGTTTAGCAACAGAAGCTCTAAAAAAGCTTCGTGAAAGGAAAGATGCATATGACATAGTGATCAGTGATGTAAACATGCCTGACATGGATGGTTTCAAGCTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCAGTTATCATGATGTCTGTGGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACATGGAGCATGTGATTACCTCCTTAAGCCAATAAGGATGAAAGAACTGAGAAATATATGGCAACATGTCTTTAGAAAAAGAATGCATGAGGCAAGAGAATTTGAAAGTCATGAGGGCTTTGAGGGTATTCACTTGATGAGAAATGGGTCAGATCACTCTGATGATGGTAACCAGTTTTCTGTGGAAGAAATTACCTCAATAAAGAAAAGGAAAAATATAGATAACAATCATGATGATAAAGAATTTGGAGATCAATCTTCAACAAAGAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCACCAGAAGTTTGTTAAAGCAGTGGATCAGATTGGATTTGATAAAATTGGTCCCAAGAAAATTCTAGATTTGATGAATGTTCCTTGGCTAACTAGAGAAAATGTTGCCAGTCACTTGCAGAAATACCGGCTCTACTTGAGTAGGTTGCAAAAGGAAAATGATCAGAAATCTTCCTCAAATGGAATGAAGCATTCAGATTTACCTTCAAAAGATCCTGGAAATTTCCCTTCAAAAGATCCAGGAAGTTTTAGTTTTTTGAATTCTAAAAACAAGCAACAAAATGATGTTGAAATTGACAGCATCAGATATTCAGATGGAACATTGCAACTTCAGATGGATGCTACAAGTCATGAAGCTGATCTCAAGGGAATTGTCTCAGAGCATACAATAGAAAAAAGATCTTTGACCATTGACATTCCTGACCAAAAGATAGGAAATAGTTCACAGATGGGCCTTAATCAACCTTTTGCATTTGTAGAGTCAGAAGCAAACCATGCAGTATTAGATAGCACCATACCAACACAGTACTCTTGGAGTGAAGTTCCAAAAAGGCCAATTAAAGAAGAACAAAAGACACTTGTTCAATTAAAGGATTGCTTCAGCCAGTTGCCATTACATGGTACACAGCATCACATTGAGCTTGATCAATCACAATCAATTGCTTCAATTATTTCCAATCCTTCTGTAACACAAGAGGTTGCTGCCTGTTCAGAAACCAAACCTTTGTATGCTGATTACAAAAGTGATTATGTCAGTCCTGTGAATTCAATAGGGTCTGCAGTTGAAACCTTTCCTATTCATTCCAAAAGCCTTATGGTAAATGATCAATCTCCAGAGTCCATTTTCAGTACAAACTTGGGCTTGAAAACACAGGGATTTGATCTTGGTTGCATTTCTGATATGGAATTTTACCAAAGGAACCTAGTTTTGGGTGATGAGGCAGTTTCTGCACCATTGGAGGAGGACTTACAATTCTTTTTGCTGCAAGGTGAATACTATAATATGGACTTTGGCTTGCAGAATATAGAGATGTCAGAGTATTATGATCCAAGGCTTATTGCTGAAGTTCCTACCCACTTATATGATTCAGGAGATTATTCAGTATTAGATCAAAGTCTATTCATAGCATGA 1788 0.3758 MIHRSLLSENMDNGCFPSPRLDAFPAGLRVLVVDDDPTWLRILEKMLKKCFYEVTTCCLATEALKKLRERKDAYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRMHEAREFESHEGFEGIHLMRNGSDHSDDGNQFSVEEITSIKKRKNIDNNHDDKEFGDQSSTKKARVVWSVDLHQKFVKAVDQIGFDKIGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDQKSSSNGMKHSDLPSKDPGNFPSKDPGSFSFLNSKNKQQNDVEIDSIRYSDGTLQLQMDATSHEADLKGIVSEHTIEKRSLTIDIPDQKIGNSSQMGLNQPFAFVESEANHAVLDSTIPTQYSWSEVPKRPIKEEQKTLVQLKDCFSQLPLHGTQHHIELDQSQSIASIISNPSVTQEVAACSETKPLYADYKSDYVSPVNSIGSAVETFPIHSKSLMVNDQSPESIFSTNLGLKTQGFDLGCISDMEFYQRNLVLGDEAVSAPLEEDLQFFLLQGEYYNMDFGLQNIEMSEYYDPRLIAEVPTHLYDSGDYSVLDQSLFIA. 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05843 595 ProSiteProfiles Response regulatory domain profile. 29 144 IPR001789 GO:0000160
Seca11g05843 595 MobiDBLite consensus disorder prediction 271 308 - -
Seca11g05843 595 PANTHER TWO-COMPONENT RESPONSE REGULATOR 28 313 IPR045279 GO:0009736
Seca11g05843 595 Pfam Response regulator receiver domain 30 139 IPR001789 GO:0000160
Seca11g05843 595 SMART REC_2 28 140 IPR001789 GO:0000160
Seca11g05843 595 SUPERFAMILY CheY-like 27 154 IPR011006 -
Seca11g05843 595 Gene3D - 28 185 - -
Seca11g05843 595 CDD REC_typeB_ARR-like 30 144 - -
Seca11g05843 595 FunFam Two-component response regulator 206 269 - -
Seca11g05843 595 Pfam Myb-like DNA-binding domain 212 262 IPR001005 -
Seca11g05843 595 Gene3D - 206 269 - -
Seca11g05843 595 SUPERFAMILY Homeodomain-like 208 267 IPR009057 -
Seca11g05843 595 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 263 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05843 Seca-Chr11 158644622 158649135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05843 21 276 Response Regulator Gene Family AT2G25180 54.264 5.45e-82 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Seca11g05843 Response_reg 2.7e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05843 K14491 - gmx:100778324 951.429