Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05841 ATGAAATTGGTTTACAGTCACTTGGCTCCTCTCTTTCTATTGTTGCTACAGTGGATGGATTGTTCTTGTACATGCTTTCTACACAGATATCTCAGCCTTTTCCACATACTTATTTACAAGGTACACAATGATGGTAGATCAAACATAACTTCTCAGGGAAGAAAGGCAACCATCCAGGACTTCTATGCTGTTATACTGCCATCTCTCCAGCGGCTTCATGGTAGCTTGGACAAGTTGGAGTTTTGTAAGAAAGGGCACTCTAGTTTTGAAGGTTCAAGTTATGGCAAGAAGGTGATTGAAGGAAATGGGAAACTGATCAATGTTGATTTGGAAAGAGAAGATGAATGTGGGATATGCTTAGAGCCATGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGGAACACACGGTCAGAATCTTGTCCTTTTTGCCGTGGTAGCTTAAGGAGAGTTAATTCAGAGGATTTATGGGTTCTCACTTGTAATGAAGATGTAGTTGATACTGAAACAGTTTCCAAGGAGGACTTATTGCGTTTCTACCTTTATATCAACAGTCTACCTAAAGATTACCCAGATGCACTTTTCTTAATGTATTATGAATATCTCATTTGA 639 0.3944 MKLVYSHLAPLFLLLLQWMDCSCTCFLHRYLSLFHILIYKVHNDGRSNITSQGRKATIQDFYAVILPSLQRLHGSLDKLEFCKKGHSSFEGSSYGKKVIEGNGKLINVDLEREDECGICLEPCTKMVLPNCCHAMCIKCYRKWNTRSESCPFCRGSLRRVNSEDLWVLTCNEDVVDTETVSKEDLLRFYLYINSLPKDYPDALFLMYYEYLI. 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05841 212 PANTHER RING FINGER PROTEIN 41, 151 1 210 - -
Seca11g05841 212 FunFam RING/U-box superfamily protein 98 163 - -
Seca11g05841 212 Pfam Ring finger domain 114 154 IPR001841 -
Seca11g05841 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 165 IPR013083 -
Seca11g05841 212 ProSiteProfiles Zinc finger RING-type profile. 116 154 IPR001841 -
Seca11g05841 212 SUPERFAMILY RING/U-box 107 158 - -
Seca11g05841 212 SMART ring_2 116 153 IPR001841 -
Seca11g05841 212 ProSitePatterns Zinc finger RING-type signature. 131 140 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05841 Seca-Chr11 158622083 158624621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05841 62 157 RAD5 or RAD16-like Gene Family AT5G05130 31.683 1.12e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05841 - - gmx:100790422 414.846