Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05840 ATGGGTCGTCGTAAGATTGAGATTGCAATGGTGAAGGACCCAAACACAAGGCAAGTCACATTCTCAAAGCGTCGAACGGGCTTATTCAAAAAAGCAAATGAATTATCCGTTTTGTGTGGAGCCGAAGTTGCTATTGTTGTGTTTTCACCTGGGAACAAGCCTTATTCTTTTGGGCACCCAGGTGTTGATGTTGTTGCTGACAAGTTTCTCCAACAACATGAGCCCAAACCAAATGATGATGATGTCAAAGGTAGCAACCCTTCTAATAAAGTGGGCAAGTTGAATCTCAAACTTGCTAATTTGATGGCCCAAATTGGTGAGGGTGAAAAAAAGGCTGGAGAGTATGATGAGACCCTAAAACAACATGATGTGACCCAACTCAATGTTGATGAACTTAAGGAATTGCAAGGTTCCTGTTTAGGGCTCAAGCGTAGGGTGAAGGAATATTTGACTGAAATTGAGGTGGCTGAATGCATGTTGCTCCTTGCAAAGAAACCTGTGGAGGGAATAACAAATCAAGTTGCCAAAAGGAGAAGAAGAAATGTTTGA 549 0.4208 MGRRKIEIAMVKDPNTRQVTFSKRRTGLFKKANELSVLCGAEVAIVVFSPGNKPYSFGHPGVDVVADKFLQQHEPKPNDDDVKGSNPSNKVGKLNLKLANLMAQIGEGEKKAGEYDETLKQHDVTQLNVDELKELQGSCLGLKRRVKEYLTEIEVAECMLLLAKKPVEGITNQVAKRRRRNV. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05840 182 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca11g05840 182 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Seca11g05840 182 PANTHER MADS BOX PROTEIN 3 138 - -
Seca11g05840 182 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca11g05840 182 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Seca11g05840 182 Gene3D - 14 81 IPR036879 GO:0003677|GO:0046983
Seca11g05840 182 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca11g05840 182 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca11g05840 182 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca11g05840 182 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Seca11g05840 182 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05840 Seca-Chr11 158610124 158610672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05840 1 165 Type I MADS-box Gene Family AT2G34440 43.103 8.59e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca11g05840 SRF-TF 1.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05840 - - gmx:100791127 231.106