Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05831 ATGGTTATATTCAAATTTCAACTTATGACTATGTATGACTGTTTTCAGCAAGAGCAAAAAGAGGCATACCTTCCAGCAGAGTTGGGCAGTCCAAGTAAACAGCCGACAAACTACTTTTGCAAAATTTTGACAGCCAGTGACACAAGCACTCATGGGGGATTTTCTGTTCCTCGCCGGGCAGCTGAAAAAGTTTTTCCTCCATTGGACTTTTCGCAACAACCTCCTGCTCAAGAGTTGATTGCAAGGGATTTGCATGGCAATGAATGGAAATTCAGACATATCTTCCGTGGCCAGCCCAAAAGACATCTACTTACAACAGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTAGTTGCTGGTGATTCAGTGCTGTTTATCTGGAATGAAAAGAATCAATTGCTTCTTGGCATTCGACGGGCTAATCGACCGCAACCTGTGATGCCTTCATCAGTGTTGTCCAGTGATAGCATGCACCTGGGGCTTCTTGCTGCGGCAGCTCATGCAGCTGCAACAAATAGTCGTTTCACCATCTTCTATAACCCACGTGCTAGCCCATCAGAATTTGTCATACCCTTAGCAAAATATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGCTTCAGGATGCTATTTGAAACAGAGGAATCTAGTGTGCGGCGATACATGGGCACGATAACTGGCATCAGTGACTTGGATTCTGTCCGGTGGCCAAATTCACATTGGCGTTCAGTCAAGGTTGGCTGGGATGAATCCACAGCAGGTGAGAGGCAACCTCGAGTGTCTCTATGGGAAATTGAACCATTAACAACATTTCCAATGTATCCGTCTCCATTTCCCCTTAGGCTTAAAAGACCATGGCCTCCAGGACTGCCTTCATTCCCTGGTTTGAAGGATGATGATTTTGGCATAAATCCTTCTCTAATGTGGCTTCGGGACACAGATAGAGGGCTTCAGTCTCTTAATTTTCAGGGGATTGGTGTTGGTCCTTGGATGCAGCCAAGGCTTGATCCCTCCATGGTGAATTTGCAAACAGATATGTACCAAGCTATGGCTGCTGCTGCACTTCAGGATGTGAGGACTTTAGATCCTTCAAAACAGCATCCTGCTTCCTTTCTTCAATTTCAGCAACCACATAACTTCCCCAACAGGACCGCTGCTTTAATGCAGAACCAGATATTGCAGCAGTCTCAACCTCAGCAGGCTTTTCCAAATAATCAAGAAAATCAGCATCCATCTCAATCTCAGGCTCAAACTCAAACACATTTCCAGCCGCATCTACAGCATCAGCATTCATTCAATAATCAGAATCATCATCATCTGCAGCAACAGCAACAGCAACAACTGCAACATCAGCAACAGCAACAGCAAGTGGTAGATCATCAGCAGATTTCAAGTGCAGTCTCTACAATGTCTCAGTTTGTTTCGGCACCTCAATCTCAATCACCACCCATGCATGCTATCTCTTCACTGGGCCATCAGCAAAGTTTTTCTGATTCAAATGGGAACCCTGTAACTTCTGCTATTGTTTCTCCCTTGCATAGTATGTTGGGTTCATTCCCCCATGATGAAACATCTCAACTTCTCAACCTTCCTAGAACAAGCTCTTGGGTTCCTGTTCAATCTTCAACTACATGGCCCTCCAAGCGTGTTGCAGTGGATCCTCTCCTTTCTTCTGGAGCATCTCAATGTGTTCTGCCTCAAATAGAGCAGCTAGGTCAGCCACAGAGTACCATGTCTCAAAATGCTATTAGCTTGCCACCATTTCCTGGTAGGGAGTGCACAATAGAAGGGAGCACTGATCCACAAAACCATCTTTTGTTTGGTGTTAATATAGAGCCCTCATCACTTCTAGTGCATAATGGGATGGCAAGCCTTAAGGGAGTTAGCAGCAACAGTGACTCATCAACCATACCTTTCCAATCTTCTAATTACCTGAATACTACAGGCACTGATTCTTCATTGAATCCTGGAATGACACAAAGTGTTGGTGAATCAGGCTTCCTGCAAACTCCAGAAAATGGAAGCCAAGGAAACCCATCAACCAAAACCTTTGTGAAGGTTTACAAATCAGGGTCCTACGGAAGATCGTTGGATATCACGAAATTCTCCAACTACCACGAGCTACGCAGTGAGCTTGCTCGTATGTTTGGCCTTGAAGGTGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCAAGAGAATGATGTTCTTCTCCTCGGTGATGGCCCCTGGCCGGAATTTGTAAATAGTGTATGGTGCATCAAGATACTTTCCCCTCAGGAAGTGCAGCAAATGGGCAACAATGGCCTGGGGCTTCTGAACTCAGTTCCAAATCAGAGGCTCTCTAATGGAATCTGTGATGACTATGCAGGCCGTGAAGACTCAAGAAATTTAAGCACTGGGATAACAGCTGTGGGGTCTTTAGACTACTGA 2457 0.4522 MVIFKFQLMTMYDCFQQEQKEAYLPAELGSPSKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQPVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFPGLKDDDFGINPSLMWLRDTDRGLQSLNFQGIGVGPWMQPRLDPSMVNLQTDMYQAMAAAALQDVRTLDPSKQHPASFLQFQQPHNFPNRTAALMQNQILQQSQPQQAFPNNQENQHPSQSQAQTQTHFQPHLQHQHSFNNQNHHHLQQQQQQQLQHQQQQQQVVDHQQISSAVSTMSQFVSAPQSQSPPMHAISSLGHQQSFSDSNGNPVTSAIVSPLHSMLGSFPHDETSQLLNLPRTSSWVPVQSSTTWPSKRVAVDPLLSSGASQCVLPQIEQLGQPQSTMSQNAISLPPFPGRECTIEGSTDPQNHLLFGVNIEPSSLLVHNGMASLKGVSSNSDSSTIPFQSSNYLNTTGTDSSLNPGMTQSVGESGFLQTPENGSQGNPSTKTFVKVYKSGSYGRSLDITKFSNYHELRSELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNNGLGLLNSVPNQRLSNGICDDYAGREDSRNLSTGITAVGSLDY. 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05831 818 MobiDBLite consensus disorder prediction 665 684 - -
Seca11g05831 818 MobiDBLite consensus disorder prediction 398 507 - -
Seca11g05831 818 ProSiteProfiles B3 DNA-binding domain profile. 39 141 IPR003340 GO:0003677
Seca11g05831 818 SUPERFAMILY DNA-binding pseudobarrel domain 24 168 IPR015300 -
Seca11g05831 818 FunFam Auxin response factor 37 141 - -
Seca11g05831 818 Gene3D - 37 140 IPR015300 -
Seca11g05831 818 SMART B3_2 39 141 IPR003340 GO:0003677
Seca11g05831 818 Pfam B3 DNA binding domain 39 140 IPR003340 GO:0003677
Seca11g05831 818 FunFam Auxin response factor 680 774 - -
Seca11g05831 818 ProSiteProfiles PB1 domain profile. 685 769 IPR000270 GO:0005515
Seca11g05831 818 Pfam Auxin response factor 165 248 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca11g05831 818 Pfam AUX/IAA family 677 770 IPR033389 -
Seca11g05831 818 CDD B3_DNA 38 139 IPR003340 GO:0003677
Seca11g05831 818 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 774 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca11g05831 818 Gene3D - 203 275 - -
Seca11g05831 818 SUPERFAMILY CAD & PB1 domains 677 760 - -
Seca11g05831 818 Gene3D - 681 774 - -
Seca11g05831 818 FunFam Auxin response factor 203 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05831 Seca-Chr11 158498598 158503874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05831 6 395 B3 DNA Binding Superfamily AT1G30330 83.206 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca11g05831 AUX_IAA 1.1e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05831 - - gmx:100777789 1399.8