Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05824 ATGACGTCACGTGGTAGCAGCAGTAGCAGGAGCCGTGTCCGTGTGGGAAAATATGAAATAGGTCGGACCCTGGGTGAGGGAAACTTTGCTAAGGTGAAGTTTGCACAGAACACTGAGACCGGAGAGAATGTGGCCATCAAAGTTCTTGACAAACAAAAAATTCTCAAGCACAATATGACAGCCCAGATAAAACGAGAAATAACAACAATGAAACTAATTAGACATCCGAATGTTATACACATGTACGAGGCAAGTCACGGGAGACTGAAAGAAGATGAAGCAAGAAAATATTTTCAGCATCTTATTTGTGCTGTGGATTACTGTCACAGTAGAGGGGTTTTCCATAGAGACTTAAAGCCAGAGAATTTGTTGTTGGGTTCTAATGGAGTGCTTAAAGTATCAGATTTTGGATTGAGTGCACTACATCAACAAGTTCGAGAAGATGGGCTACTTCACACAACATGTGGTACACCAAATTATATTGCCCCTGAGGTGATCCAGGACAAAGGCTATGATGGTGCAAAGGCTGATCTCTGGTCATGTGGTGTTATTCTTTTTATTTTAATGGCTGGCTATTTGCCCTTTGAAGATAACAATCTTATGGCTTTATATAAAAAGATTTTCAAGGCTGAGTTCACTTGTCCTCCATGGTTTTCTTCAAAATCAAAGAAACTCATCAATAGAATCCTTGATCCCAATCCTGCTAAACGGATTACAATTGCTGAGGTCATTGAGAATGAGTGGTTCAAGAAGGGGTATGTGCCTCCTAAATTTTCAGGAGCCAATGTTAGTCTTGATGATGTAAATGCTATATTCAGTGAAGCAGATGATTCACAAAATCTAATTGTGGAAAGTCGAGAAGAGAGACCTGTTGCACCTGTGACTATGAATGCCTTTGAGCTTATCTTTACATCTCAGGGCCTCAACCTTGGAAATCTTTTCGAGGAGCAGATGGGACTTGTTAAAAGGGAAACAAGATTCACATCCAAATGTTCCGCAGATGAGATAATTTCAAAAATTGAGGAAGCTGCAATGCCTTTGGGTTTTAGTGTTAAGAAGAACAACTATAAGGTGAAGATTCAAGGGGAAAAGACTGGACGTAAAGGTCATGTATCAATAGTCACTGAGATCTTTGAGGTGGCCCCTTCACTAAACATGGTTGAGCTTCGAAAGTCTGGAGGAGATACTCTGGAATTTTACAAGGCAATTAACAAGGAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGACGTCACGGACCCGTGTGGGAAAATATGAATTGGGTCGGACCCTGGGCGAAGGGGGCTTCGCCAAGGTGAAGTTTGCAAGGAACACTGACTCCGGAGAGAGTGTAGCCATCAAAATTCTGGACAAACAAAAAATTCTCAAGCACAAAATGATAGGCCAGATCAAACGAGAAATATCAACGATGAAACTAATTAGACATCCAAATGTCATACGTATGTATGAGGCAAACCATGGGAGACTGAAAGAAGATGAAGCAAGAAAATATTTTCAGCATCTTATATGTGCTGTGGATTACTGTCATAGTAGAGGTGTTTTCCATAGGGACTTGAAGCCGGAGAATTTGTTGCTGGATGCTGATGGAGTGCTTAAAGTATCAGATTTTGGATTGAGTGCACTACCTCAACAAGTTCGAGAAGATGGGCTACTTCACACAAAATGTGGTACGCCAAATTATGTTGCCCCTGAGGTGATCCACGACAAAGGCTATGATGGACCAAAGGCTGATCTGTGGTCATGTGGTGTTATTCTTTTTGTTTTAATGTCTGGTTATTTGCCCTTTGACGATAACAACCTTGTGGCTTTATATAAAAAGATTTCCAAGGCTGAGTTTACTTGTCCTTCTTGGTTTTCTTCAAGTTCAAAGAAACTAATCAAGAGAATCTTGGATCCCAACCCTGCTACACGGATCACAATTGCTGAGGTCATTGAGAATGAGTGGTTCAAGAAGGGGTATGTGCTGCCTCCTAGATTTTCAGAGGCCAATGTTAGTCTTGATGATGTAAATGCTATTTTCAGTGAAGCAGATGATTCACAAAATCTTATTGTGGAGAGGCGAGAAGAGGGGCCTGTTGCACCTATGACTATGAATGCATTTGAGCTTATCTTTAAGTCTCAAGGCCTCAACCTTGAAAATCTTTTTGGGAAACAGATGGGACTTGTTAAAAGGGAAACAAGATTCACATCCAAATGTTCAACAGATGAGATAATTTCAAAAATTGAGCAGGCTGCATTGCCTCTGGGTTTTAGTGTTAAGAAGAACAACTATAAGGTGAAGATTCAAGGGGAAAAGACTGGACGTAAAGGTCATCTATCAATAGTCACTGAGATCTTTGAGGTGGCCCCTTCACTTAACATGGTTGAGCTTCGGAAGTCTGGGGGAGATACTCTAGAATTTTATAAGTTCTACAAGAATCTATCTAATGGGCTAAGAGATATAATTTGGAAAGCAGAGCCAATCGATGAAGAAACAAATGGTTAG 2511 0.4066 MTSRGSSSSRSRVRVGKYEIGRTLGEGNFAKVKFAQNTETGENVAIKVLDKQKILKHNMTAQIKREITTMKLIRHPNVIHMYEASHGRLKEDEARKYFQHLICAVDYCHSRGVFHRDLKPENLLLGSNGVLKVSDFGLSALHQQVREDGLLHTTCGTPNYIAPEVIQDKGYDGAKADLWSCGVILFILMAGYLPFEDNNLMALYKKIFKAEFTCPPWFSSKSKKLINRILDPNPAKRITIAEVIENEWFKKGYVPPKFSGANVSLDDVNAIFSEADDSQNLIVESREERPVAPVTMNAFELIFTSQGLNLGNLFEEQMGLVKRETRFTSKCSADEIISKIEEAAMPLGFSVKKNNYKVKIQGEKTGRKGHVSIVTEIFEVAPSLNMVELRKSGGDTLEFYKAINKEEKKKKKKKKKKMTSRTRVGKYELGRTLGEGGFAKVKFARNTDSGESVAIKILDKQKILKHKMIGQIKREISTMKLIRHPNVIRMYEANHGRLKEDEARKYFQHLICAVDYCHSRGVFHRDLKPENLLLDADGVLKVSDFGLSALPQQVREDGLLHTKCGTPNYVAPEVIHDKGYDGPKADLWSCGVILFVLMSGYLPFDDNNLVALYKKISKAEFTCPSWFSSSSKKLIKRILDPNPATRITIAEVIENEWFKKGYVLPPRFSEANVSLDDVNAIFSEADDSQNLIVERREEGPVAPMTMNAFELIFKSQGLNLENLFGKQMGLVKRETRFTSKCSTDEIISKIEQAALPLGFSVKKNNYKVKIQGEKTGRKGHLSIVTEIFEVAPSLNMVELRKSGGDTLEFYKFYKNLSNGLRDIIWKAEPIDEETNG. 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05824 836 CDD CIPK_C 707 817 - -
Seca11g05824 836 Pfam Protein kinase domain 427 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05824 836 Pfam Protein kinase domain 495 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05824 836 Pfam Protein kinase domain 18 84 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05824 836 Pfam Protein kinase domain 86 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05824 836 SMART serkin_6 427 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05824 836 SMART serkin_6 18 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05824 836 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Seca11g05824 836 SUPERFAMILY Protein kinase-like (PK-like) 14 264 IPR011009 -
Seca11g05824 836 Gene3D Kinase associated domain 1, KA1 298 420 - -
Seca11g05824 836 ProSiteProfiles NAF domain profile. 701 725 IPR018451 GO:0007165
Seca11g05824 836 FunFam Non-specific serine/threonine protein kinase 290 420 - -
Seca11g05824 836 ProSiteProfiles NAF domain profile. 291 315 IPR018451 GO:0007165
Seca11g05824 836 ProSiteProfiles Protein kinase domain profile. 18 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05824 836 ProSitePatterns Serine/Threonine protein kinases active-site signature. 522 534 IPR008271 GO:0004672|GO:0006468
Seca11g05824 836 Gene3D Kinase associated domain 1, KA1 701 826 - -
Seca11g05824 836 CDD CIPK_C 297 401 - -
Seca11g05824 836 FunFam Non-specific serine/threonine protein kinase 78 256 - -
Seca11g05824 836 FunFam Non-specific serine/threonine protein kinase 700 826 - -
Seca11g05824 836 Gene3D Transferase(Phosphotransferase) domain 1 421 699 - -
Seca11g05824 836 FunFam Non-specific serine/threonine protein kinase 9 90 - -
Seca11g05824 836 Pfam NAF domain 703 763 IPR004041 GO:0007165
Seca11g05824 836 Pfam NAF domain 293 353 IPR004041 GO:0007165
Seca11g05824 836 ProSitePatterns Protein kinases ATP-binding region signature. 433 456 IPR017441 GO:0005524
Seca11g05824 836 ProSiteProfiles Protein kinase domain profile. 427 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05824 836 Coils Coil 397 417 - -
Seca11g05824 836 FunFam Non-specific serine/threonine protein kinase 418 499 - -
Seca11g05824 836 Gene3D Transferase(Phosphotransferase) domain 1 10 297 - -
Seca11g05824 836 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 401 - -
Seca11g05824 836 FunFam Non-specific serine/threonine protein kinase 488 665 - -
Seca11g05824 836 ProSitePatterns Serine/Threonine protein kinases active-site signature. 113 125 IPR008271 GO:0004672|GO:0006468
Seca11g05824 836 SUPERFAMILY Protein kinase-like (PK-like) 424 670 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05824 Seca-Chr11 158367651 158378132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05824 413 833 CBL-interacting serine-threonine protein kinases AT1G01140 61.863 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca11g05824 Pkinase 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05824 - - gmx:100788746 689.493