LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g05824	ATGACGTCACGTGGTAGCAGCAGTAGCAGGAGCCGTGTCCGTGTGGGAAAATATGAAATAGGTCGGACCCTGGGTGAGGGAAACTTTGCTAAGGTGAAGTTTGCACAGAACACTGAGACCGGAGAGAATGTGGCCATCAAAGTTCTTGACAAACAAAAAATTCTCAAGCACAATATGACAGCCCAGATAAAACGAGAAATAACAACAATGAAACTAATTAGACATCCGAATGTTATACACATGTACGAGGCAAGTCACGGGAGACTGAAAGAAGATGAAGCAAGAAAATATTTTCAGCATCTTATTTGTGCTGTGGATTACTGTCACAGTAGAGGGGTTTTCCATAGAGACTTAAAGCCAGAGAATTTGTTGTTGGGTTCTAATGGAGTGCTTAAAGTATCAGATTTTGGATTGAGTGCACTACATCAACAAGTTCGAGAAGATGGGCTACTTCACACAACATGTGGTACACCAAATTATATTGCCCCTGAGGTGATCCAGGACAAAGGCTATGATGGTGCAAAGGCTGATCTCTGGTCATGTGGTGTTATTCTTTTTATTTTAATGGCTGGCTATTTGCCCTTTGAAGATAACAATCTTATGGCTTTATATAAAAAGATTTTCAAGGCTGAGTTCACTTGTCCTCCATGGTTTTCTTCAAAATCAAAGAAACTCATCAATAGAATCCTTGATCCCAATCCTGCTAAACGGATTACAATTGCTGAGGTCATTGAGAATGAGTGGTTCAAGAAGGGGTATGTGCCTCCTAAATTTTCAGGAGCCAATGTTAGTCTTGATGATGTAAATGCTATATTCAGTGAAGCAGATGATTCACAAAATCTAATTGTGGAAAGTCGAGAAGAGAGACCTGTTGCACCTGTGACTATGAATGCCTTTGAGCTTATCTTTACATCTCAGGGCCTCAACCTTGGAAATCTTTTCGAGGAGCAGATGGGACTTGTTAAAAGGGAAACAAGATTCACATCCAAATGTTCCGCAGATGAGATAATTTCAAAAATTGAGGAAGCTGCAATGCCTTTGGGTTTTAGTGTTAAGAAGAACAACTATAAGGTGAAGATTCAAGGGGAAAAGACTGGACGTAAAGGTCATGTATCAATAGTCACTGAGATCTTTGAGGTGGCCCCTTCACTAAACATGGTTGAGCTTCGAAAGTCTGGAGGAGATACTCTGGAATTTTACAAGGCAATTAACAAGGAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGACGTCACGGACCCGTGTGGGAAAATATGAATTGGGTCGGACCCTGGGCGAAGGGGGCTTCGCCAAGGTGAAGTTTGCAAGGAACACTGACTCCGGAGAGAGTGTAGCCATCAAAATTCTGGACAAACAAAAAATTCTCAAGCACAAAATGATAGGCCAGATCAAACGAGAAATATCAACGATGAAACTAATTAGACATCCAAATGTCATACGTATGTATGAGGCAAACCATGGGAGACTGAAAGAAGATGAAGCAAGAAAATATTTTCAGCATCTTATATGTGCTGTGGATTACTGTCATAGTAGAGGTGTTTTCCATAGGGACTTGAAGCCGGAGAATTTGTTGCTGGATGCTGATGGAGTGCTTAAAGTATCAGATTTTGGATTGAGTGCACTACCTCAACAAGTTCGAGAAGATGGGCTACTTCACACAAAATGTGGTACGCCAAATTATGTTGCCCCTGAGGTGATCCACGACAAAGGCTATGATGGACCAAAGGCTGATCTGTGGTCATGTGGTGTTATTCTTTTTGTTTTAATGTCTGGTTATTTGCCCTTTGACGATAACAACCTTGTGGCTTTATATAAAAAGATTTCCAAGGCTGAGTTTACTTGTCCTTCTTGGTTTTCTTCAAGTTCAAAGAAACTAATCAAGAGAATCTTGGATCCCAACCCTGCTACACGGATCACAATTGCTGAGGTCATTGAGAATGAGTGGTTCAAGAAGGGGTATGTGCTGCCTCCTAGATTTTCAGAGGCCAATGTTAGTCTTGATGATGTAAATGCTATTTTCAGTGAAGCAGATGATTCACAAAATCTTATTGTGGAGAGGCGAGAAGAGGGGCCTGTTGCACCTATGACTATGAATGCATTTGAGCTTATCTTTAAGTCTCAAGGCCTCAACCTTGAAAATCTTTTTGGGAAACAGATGGGACTTGTTAAAAGGGAAACAAGATTCACATCCAAATGTTCAACAGATGAGATAATTTCAAAAATTGAGCAGGCTGCATTGCCTCTGGGTTTTAGTGTTAAGAAGAACAACTATAAGGTGAAGATTCAAGGGGAAAAGACTGGACGTAAAGGTCATCTATCAATAGTCACTGAGATCTTTGAGGTGGCCCCTTCACTTAACATGGTTGAGCTTCGGAAGTCTGGGGGAGATACTCTAGAATTTTATAAGTTCTACAAGAATCTATCTAATGGGCTAAGAGATATAATTTGGAAAGCAGAGCCAATCGATGAAGAAACAAATGGTTAG	2511	0.4066	MTSRGSSSSRSRVRVGKYEIGRTLGEGNFAKVKFAQNTETGENVAIKVLDKQKILKHNMTAQIKREITTMKLIRHPNVIHMYEASHGRLKEDEARKYFQHLICAVDYCHSRGVFHRDLKPENLLLGSNGVLKVSDFGLSALHQQVREDGLLHTTCGTPNYIAPEVIQDKGYDGAKADLWSCGVILFILMAGYLPFEDNNLMALYKKIFKAEFTCPPWFSSKSKKLINRILDPNPAKRITIAEVIENEWFKKGYVPPKFSGANVSLDDVNAIFSEADDSQNLIVESREERPVAPVTMNAFELIFTSQGLNLGNLFEEQMGLVKRETRFTSKCSADEIISKIEEAAMPLGFSVKKNNYKVKIQGEKTGRKGHVSIVTEIFEVAPSLNMVELRKSGGDTLEFYKAINKEEKKKKKKKKKKMTSRTRVGKYELGRTLGEGGFAKVKFARNTDSGESVAIKILDKQKILKHKMIGQIKREISTMKLIRHPNVIRMYEANHGRLKEDEARKYFQHLICAVDYCHSRGVFHRDLKPENLLLDADGVLKVSDFGLSALPQQVREDGLLHTKCGTPNYVAPEVIHDKGYDGPKADLWSCGVILFVLMSGYLPFDDNNLVALYKKISKAEFTCPSWFSSSSKKLIKRILDPNPATRITIAEVIENEWFKKGYVLPPRFSEANVSLDDVNAIFSEADDSQNLIVERREEGPVAPMTMNAFELIFKSQGLNLENLFGKQMGLVKRETRFTSKCSTDEIISKIEQAALPLGFSVKKNNYKVKIQGEKTGRKGHLSIVTEIFEVAPSLNMVELRKSGGDTLEFYKFYKNLSNGLRDIIWKAEPIDEETNG.	837

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g05824	836	CDD	CIPK_C	707	817	-	-
	Seca11g05824	836	Pfam	Protein kinase domain	427	493	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g05824	836	Pfam	Protein kinase domain	495	658	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g05824	836	Pfam	Protein kinase domain	18	84	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g05824	836	Pfam	Protein kinase domain	86	249	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g05824	836	SMART	serkin_6	427	658	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g05824	836	SMART	serkin_6	18	249	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g05824	836	ProSitePatterns	Protein kinases ATP-binding region signature.	24	47	IPR017441	GO:0005524
	Seca11g05824	836	SUPERFAMILY	Protein kinase-like (PK-like)	14	264	IPR011009	-
	Seca11g05824	836	Gene3D	Kinase associated domain 1, KA1	298	420	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g05824	Seca-Chr11	158367651	158378132	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g05824	413	833	CBL-interacting serine-threonine protein kinases	AT1G01140	61.863	0.0	583

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Seca11g05824		Pkinase	1.7e-44	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g05824	-		-	gmx:100788746	689.493

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