Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05823 ATGGGGGAAGAAAAGCAACGCAGCATACCGGCTTTGCCATGGATGCGAGACCCTGTTGACGTCACTCGCTGTCAAGAACTTCCCCTTGATTCCGTTCCTTGCCTCAATCCCAAGTTAAAATCAGCATTAGAGAACATGGGAATCTCGAACCTGTTTCCCGTTCAAGTCGCCGTTTGGCAAGAGACGGTTGGGCCTGGCAACTTCGAGCGAGACATTTGCGTTAACTCACCCACCGGAAGCGGCAAAACCTTGGCATACGCTCTCCCTATTGTGCAGTTACTATCGAAGCGCGTCACCAAATGCCTACGCGCCTTGGTCGTGGTTCCCACGCGCGACCTCGCATTGCAGGTTAAACGAGTCTTCGACGCCGTTGCGTCTCCGCTTGGCTTGCGCGTTGGCTTGGCTGTCGGTCAGTCTTCGGTCGCCGACGAGATTAATGAGCTCGTCGAGGTGCCGGCACGTGAGGCTGGCATGTGCTATGATACTCAACACGTTCTGCTTCCTCGGTTTCAGAGTAAGGTCGATATATTGGTAGCAACCCCTGGAAGGCTCATGGATCACATCAATACTACTAAAGGATTCACGCTTGAGCATCTTTATTATCTCGTGGTTGATGAAACAGATCGACTGCTACGAGAGGCCTACCAGTCCTGGCTGCCTACTGTGCTTGAATTGACCCAATCTAATGATGATAATTATTTTCAACCTGCTGATTCTTTTCTCCCTTGTTCTCTTGGTGCATTAAGAACCAGAAGAAGATGTGGAGTTGAGAGGGGGTTCAAGGATAAACCTTACCCTAGGCTGGCAAAGATGGTTCTATCTGCAACATTAACTCAGGATCCAGGGAGGCTTGTTCAGCTTAATTTGCATCACCCTTTATTCCTGAGAGCTGGGCAAACACGTTATCGGCTCCCAGAAAATTTGGAATCTTACAAACTTGTATGGCATTGCATGGTTTTTTTCATTCACTTCAATCATATGTTAATGATTATAAGAGACTCACATCATGAATGGTATTTTATTTTCTCTTTTACCTTTTAA 1041 0.4755 MGEEKQRSIPALPWMRDPVDVTRCQELPLDSVPCLNPKLKSALENMGISNLFPVQVAVWQETVGPGNFERDICVNSPTGSGKTLAYALPIVQLLSKRVTKCLRALVVVPTRDLALQVKRVFDAVASPLGLRVGLAVGQSSVADEINELVEVPAREAGMCYDTQHVLLPRFQSKVDILVATPGRLMDHINTTKGFTLEHLYYLVVDETDRLLREAYQSWLPTVLELTQSNDDNYFQPADSFLPCSLGALRTRRRCGVERGFKDKPYPRLAKMVLSATLTQDPGRLVQLNLHHPLFLRAGQTRYRLPENLESYKLVWHCMVFFIHFNHMLMIIRDSHHEWYFIFSFTF. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05823 346 PANTHER RNA HELICASE 35 314 - -
Seca11g05823 346 CDD DEADc_DDX51 39 295 - -
Seca11g05823 346 SMART ultradead3 47 311 IPR014001 -
Seca11g05823 346 FunFam ATP-dependent RNA helicase DDX51 16 298 - -
Seca11g05823 346 Gene3D - 16 298 IPR027417 -
Seca11g05823 346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 295 IPR027417 -
Seca11g05823 346 Pfam DEAD/DEAH box helicase 53 281 IPR011545 GO:0003676|GO:0005524
Seca11g05823 346 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 295 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05823 Seca-Chr11 158364753 158366981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05823 57 225 Eukaryotic Initiation Factors Gene Family AT3G13920 26.627 3.32e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05823 K14807 - cit:102616133 472.241