Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05822 ATGACTCGTGGAATGGATGTTGAAGGGGTAAGAAATGTCATTAATTATGACATGCCCAAATACATAAAAACTTATGTTCATCGGGCTGGTAGGACTGCAAGAGCTGGCCTCACTGGGCGTTGCTTCACATTGATGTCAAAAGATGAGGTTCGACGATTTAAGAAGTTGATGCAAAAGGCTGAAGCTAGTTCATGTCCTGAGCATATTGTTCCACCCAGTTTGATTGAAGCACTTCATACTACCTACGAATCAGCACTGAAAAAATTTAAGGAGATAATTTTGGAGACTCGAAAGAAACCCAGTGATTAG 309 0.4078 MTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGLTGRCFTLMSKDEVRRFKKLMQKAEASSCPEHIVPPSLIEALHTTYESALKKFKEIILETRKKPSD. 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05822 102 Gene3D - 1 102 IPR027417 -
Seca11g05822 102 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 65 IPR027417 -
Seca11g05822 102 Pfam Helicase conserved C-terminal domain 2 36 IPR001650 -
Seca11g05822 102 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 78 IPR001650 -
Seca11g05822 102 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 1 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05822 Seca-Chr11 158360877 158362729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05822 3 46 Eukaryotic Initiation Factors Gene Family AT5G11170 50.000 1.72e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05822 K14807 - gmx:100789424 167.162