Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05805 ATGGCCTTGCAGAACATTGGTGCCAGCAATAGCGATGATGCCTTCTACAGGTATAAGATGCCTAAAATGATTACCAAAATTGAGGGTAGAGGTAATGGCATCAAAACAAATATTGTCAACATGGTTGATATTGCAAAAGCGTTGGCAAGGCCAGCTTCCTACACAACAAAGTATTTTGGTTGTGAACTTGGAGCCCAATCAAAATTTGATGAGAAGACTGGGACTTCTCATGTTAATGGGGCACATGATACTGCAAAACTTGCCGGTCTTCTAGAGAACTTCATCAAGAAATACGTCCAGTGTTATGGTTGTGGAAATCCTGAAACTGAGATCATAATTACTAAGAATCAAATGATCCAGCTGAAATGTGCTGCTTGTGGTTTTGTGTCTGATGTGGATATGAGAGACAAGCTGACTACCTTCATCATTAAGAACCCTCCTGAAATCAAGAAAGGATCCAAAGACAAGAAGGCCATGCGGAGAGCTGAGAAAGAGAGACTGAAGGAAGGTGAAGCAGCTGATGAGGAGCTGAAAAAATTGAAGAAAGAGAGTAAGAAGAAAGGCACTACGTCTTCTAAGGACGGCGCCACAAAATCTACCTCGTCAAGGAAAAAAGCAAATGGCTCTGATGAAGACCGCACATCTCCTACTCATAGTCAAATTGATGAGAAGGATGAGGCTCAAGGTGCAGAAGATGATGATGATGATGATGATGACGTACAATGGCAAACAGATACATCACTAGAGGCTGCTAAACAACGTATCGAAGAACAGTTAAGTGCTGTGACAGCTGATATGGTCATGCTCTCCACTAATGAACCAGAGAAGAAGGAGAAAGCACAAGCAGCAAATAAGGTAAGTAATAATTCTGAGAATGGTAACTCCATTTACTGCAGGACTCTGGTTGAGGATGTCAAAGCAAATTTGAAGAAAGGTGCTACAGCAAAAGAATTGCTGACCCATCTGGGAACACTTACTGCATCTGCTCAAGAAAAGATGAGTGCTCTGTATGAAGCCCTTTTTGAGGGCATTGAGAAAGGGTTTGGAAAAGAAGCTCTCAAGAAGAAGAGCTATCTTGCTGCTGCAGTTGCTGAGGATGAGGGAATGCAGTTGTTATTACTGCGTGCAATTGAGGAATTTTCTTGCAAGTCTACTTCCAATGCATTAAAGGAGGTTGCTCTGGTCTTAAAGGCTCTCTATGATGCGGATGTGTTGGAGGAAGAGCACATAGTACTGTGGTATCAGAAGGGGCTGAAAGGCGATAATAAGAATTCCCAGATTTGGAAGAATGCTCAACCTTTCATTGATTGGCTTCAGAATGCAGAATCAGAATCGGAGGAAGAATGA 1347 0.4224 MALQNIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKNQMIQLKCAACGFVSDVDMRDKLTTFIIKNPPEIKKGSKDKKAMRRAEKERLKEGEAADEELKKLKKESKKKGTTSSKDGATKSTSSRKKANGSDEDRTSPTHSQIDEKDEAQGAEDDDDDDDDVQWQTDTSLEAAKQRIEEQLSAVTADMVMLSTNEPEKKEKAQAANKVSNNSENGNSIYCRTLVEDVKANLKKGATAKELLTHLGTLTASAQEKMSALYEALFEGIEKGFGKEALKKKSYLAAAVAEDEGMQLLLLRAIEEFSCKSTSNALKEVALVLKALYDADVLEEEHIVLWYQKGLKGDNKNSQIWKNAQPFIDWLQNAESESEEE. 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05805 448 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 447 IPR045196 GO:0003743|GO:0006413
Seca11g05805 448 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Seca11g05805 448 MobiDBLite consensus disorder prediction 147 241 - -
Seca11g05805 448 Coils Coil 438 448 - -
Seca11g05805 448 ProSiteProfiles W2 domain profile. 288 448 IPR003307 GO:0005515
Seca11g05805 448 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Seca11g05805 448 MobiDBLite consensus disorder prediction 148 225 - -
Seca11g05805 448 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Seca11g05805 448 MobiDBLite consensus disorder prediction 226 241 - -
Seca11g05805 448 CDD W2_eIF5 301 446 - -
Seca11g05805 448 Gene3D - 291 448 - -
Seca11g05805 448 Gene3D - 105 145 - -
Seca11g05805 448 SMART 542_3 356 444 IPR003307 GO:0005515
Seca11g05805 448 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Seca11g05805 448 Pfam eIF4-gamma/eIF5/eIF2-epsilon 370 448 IPR003307 GO:0005515
Seca11g05805 448 SUPERFAMILY ARM repeat 299 442 IPR016024 -
Seca11g05805 448 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Seca11g05805 448 Gene3D - 2 104 - -
Seca11g05805 448 FunFam Eukaryotic translation initiation factor 5 105 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05805 Seca-Chr11 158166549 158170759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05805 1 441 Eukaryotic Initiation Factors Gene Family AT1G36730 63.029 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05805 K03262 - gmx:100796346 676.781